Tomato Functional Genomics Database (TFGD)

TFGD

Home

Expression

Metabolite

sRNA

Links

Contact

Expression of 1-1-5.1.15.12

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.81427	0.173
27DAP/17DAP	0.76755	0.398
39DAP/27DAP	1.26384	0.301
41DAP/39DAP	0.96908	0.866
42DAP/41DAP	0.85282	0.774
43DAP/42DAP	1.07324	1
47DAP/43DAP	0.82868	0.48
52DAP/47DAP	0.974	0.916
57DAP/52DAP	1.08427	0.616

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.92384	0.177
17DAP/reference	0.92056	0.085
27DAP/reference	1.02069	0.782
39DAP/reference	0.98373	0.704
41DAP/reference	0.9495	0.085
42DAP/reference	0.99479	0.531
43DAP/reference	0.93645	0.163
47DAP/reference	0.95396	0.05
52DAP/reference	1.0585	0.121
57DAP/reference	1.05167	0.321

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.89283	0.135
27DAP/17DAP	1.01012	0.98
39DAP/27DAP	1.03453	0.626
41DAP/39DAP	0.87207	0.108
42DAP/41DAP	0.9518	0.484
43DAP/42DAP	1.08658	0.079
47DAP/43DAP	1.02032	0.88
52DAP/47DAP	0.98051	0.902
57DAP/52DAP	0.99013	0.823
57DAP/7DAP	0.95983	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.22505	0.072
17DAP/reference	1.21271	0.059
27DAP/reference	1.16145	0.041
39DAP/reference	1.3142	0.04
41DAP/reference	1.05301	0.389
42DAP/reference	1.23348	0.046
43DAP/reference	1.42618	0.008
47DAP/reference	1.14753	0.224
52DAP/reference	1.25086	0.008
57DAP/reference	1.3082	0.01

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.93035	0.238
17DAP/reference	0.87127	0.045
27DAP/reference	0.98456	0.576
39DAP/reference	0.91041	0.065
41DAP/reference	0.9415	0.226
42DAP/reference	0.99505	0.655
43DAP/reference	0.73807	0.028
47DAP/reference	0.98979	0.487
52DAP/reference	0.90698	0.006
57DAP/reference	0.8368	0.03

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.40062	0.035
17DAP/reference	1.17792	0.365
27DAP/reference	1.44212	0.028
39DAP/reference	1.36551	0.017
41DAP/reference	1.26033	0.017
42DAP/reference	1.48649	0.049
43DAP/reference	1.43378	0.018
47DAP/reference	0.97198	0.434
52DAP/reference	1.16347	0.674
57DAP/reference	1.51316	0.064

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.02204	0.966
26DAP/20DAP	0.92526	1
34DAP/26DAP	0.72306	0.075
51DAP/34DAP	1.00675	1
52DAP/51DAP	1.00059	1
53DAP/52DAP	1.01884	1
55DAP/53DAP	0.95798	0.725
57DAP/55DAP	1.03922	1
62DAP/57DAP	0.89748	0.871
68DAP/62DAP	1.20573	0.431
68DAP/14DAP	0.97203	0.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.86481	0.087

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	1.51426	0.058
Mature Green Tomato/Ripe Tomato	2.61847	0.016
Immature Eggplant/Mature Eggplant	0.33604	0.057
Ripe Pepper/Ripe Tomato	1.63065	0.256
Mature Eggplant/Ripe Tomato	2.73829	0.373

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	1.01229	1
1-1-2/M82	0.89854	1
12-2/M82	1.11356	1
12-4/M82	0.99035	1
1-3/M82	1.19972	0.479
2-1-1/M82	1.08798	0.439
2-1/M82	1.00604	1
2-6/M82	1.06884	0.594
3-2/M82	0.96989	N/A
4-1-1/M82	1.13738	1
4-1/M82	0.77548	N/A
4-3-2/M82	0.92065	1
4-3/M82	1.21883	1
5-3/M82	1.03694	1
6-2/M82	1.20701	N/A
6-3/M82	0.85819	0.916
7-1/M82	0.97211	1
7-2/M82	1.07494	1
9-3-2/M82	0.9072	0.449

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.1403	N/A
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	0.80826	1
IL7-3/WTpooled	N/A	N/A
IL12-4/WTpooled	N/A	N/A
IL1-4/WTpooled	0.95571	0.699
WT/WTpooled	N/A	N/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	1.09819	1

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.0668	0.774
DC3000/delta hrp 6h	0.9406	0.95
DC3000/delta hrp 12h	0.88548	1
DC3000/delta hrp 24h	0.81112	0.346

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	1.14147	0.06
DC3000 delta B/DC3000 delta AB	1.16034	0.237

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	1.17118	1
Exp 36h	0.82362	0.539
Exp 60h	0.88265	0.754

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	1.05979	0.936
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	0.93354	0.309
transgenic ySAMdc/azygous control (breaker)	1.34024	0.248
transgenic ySAMdc/azygous control (red)	1.98472	0.92

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.03408	0.17

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	2.00926	0.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	2.22664	0.093
Manapal/WT (break)	2.03294	0.381
Manapal/WT (red)	1.17834	0.15