Expression of 1-1-5.1.8.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10342 | 0.851 |
27DAP/17DAP | 1.23983 | 0.766 |
39DAP/27DAP | 0.75974 | 0.327 |
41DAP/39DAP | 1.134 | 0.545 |
42DAP/41DAP | 1.01937 | 1 |
43DAP/42DAP | 1.03152 | 1 |
47DAP/43DAP | 1.16432 | 0.584 |
52DAP/47DAP | 0.66829 | 0.184 |
57DAP/52DAP | 1.06077 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94581 | 0.308 |
17DAP/reference | 1.17698 | 0.08 |
27DAP/reference | 1.03928 | 0.735 |
39DAP/reference | 1.03162 | 0.903 |
41DAP/reference | 1.156 | 0.393 |
42DAP/reference | 0.90993 | 0.02 |
43DAP/reference | 1.02099 | 0.787 |
47DAP/reference | 0.96901 | 0.366 |
52DAP/reference | 1.10656 | 0.498 |
57DAP/reference | 1.00727 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.90177 | 0.299 |
27DAP/17DAP | 1.01286 | 0.968 |
39DAP/27DAP | 1.08663 | 0.496 |
41DAP/39DAP | 1.07545 | 0.887 |
42DAP/41DAP | 0.99156 | 0.841 |
43DAP/42DAP | 1.07191 | 0.25 |
47DAP/43DAP | 1.00017 | 1 |
52DAP/47DAP | 0.98487 | 0.93 |
57DAP/52DAP | 0.97279 | 0.685 |
57DAP/7DAP | 1.12396 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00591 | 0.758 |
17DAP/reference | 1.03218 | 1 |
27DAP/reference | 0.9571 | 0.303 |
39DAP/reference | 0.97576 | 0.552 |
41DAP/reference | 0.95551 | 0.375 |
42DAP/reference | 0.94495 | 0.355 |
43DAP/reference | 0.98818 | 0.421 |
47DAP/reference | 0.78107 | 0.128 |
52DAP/reference | 0.80581 | 0.043 |
57DAP/reference | 0.79539 | 0.034 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16139 | 0.094 |
17DAP/reference | 1.09706 | 0.543 |
27DAP/reference | 0.93856 | 0.249 |
39DAP/reference | 0.94927 | 0.348 |
41DAP/reference | 0.88259 | 0.183 |
42DAP/reference | 0.99506 | 0.534 |
43DAP/reference | 1.01828 | 0.831 |
47DAP/reference | 0.98087 | 0.512 |
52DAP/reference | 1.00002 | 0.713 |
57DAP/reference | 0.94728 | 0.46 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.21255 | 0.069 |
17DAP/reference | 0.96144 | 0.528 |
27DAP/reference | 0.90379 | 0.23 |
39DAP/reference | 0.87081 | 0.043 |
41DAP/reference | 0.90301 | 0.293 |
42DAP/reference | 0.77189 | 0.041 |
43DAP/reference | 0.76836 | 0.032 |
47DAP/reference | 0.80863 | 0.174 |
52DAP/reference | 0.93147 | 0.551 |
57DAP/reference | 0.76444 | 0.048 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.95262 | 1 |
26DAP/20DAP | 0.83239 | 0.244 |
34DAP/26DAP | 1.07274 | 0.819 |
51DAP/34DAP | 0.9148 | 0.508 |
52DAP/51DAP | 0.99011 | 1 |
53DAP/52DAP | 1.16173 | 0.662 |
55DAP/53DAP | 1.084 | 0.656 |
57DAP/55DAP | 1.04507 | 0.87 |
62DAP/57DAP | 1.27165 | 0.115 |
68DAP/62DAP | 0.98254 | 0.863 |
68DAP/14DAP | 0.85596 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.91943 | 0.224 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.57864 | |
Mature Green Tomato/Ripe Tomato | 1.242 | 0.835 |
Immature Eggplant/Mature Eggplant | 2.22167 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.49036 | 0.258 |
Mature Eggplant/Ripe Tomato | 1.73246 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.3328 | |
1-1-2/M82 | 1.07233 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.98179 | 1 |
1-3/M82 | 1.09131 | 0.26 |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.69808 | |
3-2/M82 | 0.99978 | 1 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.07046 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.09836 | 1 |
5-3/M82 | 1.0171 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.34852 | |
7-1/M82 | 0.9488 | |
7-2/M82 | 0.94873 | 0.796 |
9-3-2/M82 | 0.92862 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 1.26842 | |
IL1-4/WTpooled | 1.75548 | 1 |
WT/WTpooled | 0.9915 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.90199 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.11483 | 0.921 |
DC3000/delta hrp 6h | 0.96299 | 0.95 |
DC3000/delta hrp 12h | 1.04654 | 1 |
DC3000/delta hrp 24h | 1.16735 | 0.438 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.14717 | 0.384 |
DC3000 delta B/DC3000 delta AB | 1.00509 | 0.771 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 1.0867 | 1 |
Exp 60h | 1.10639 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01898 | 1 |
Var 0h | 1.03837 | 0.98 |
Var 12h I row2-row1 | 1.10041 | 0.406 |
Var 12h NI row2-row1 | 0.869 | 0.443 |
Var 36h I row2-row1 | 0.98467 | 1 |
Var 36h NI row2-row1 | 1.03463 | 1 |
Var 60h I row2-row1 | 1.18538 | 0.562 |
Var 60h NI row2-row1 | 1.21038 | 0.904 |
Time course 0hI-0hNI | 1.0719 | 0.719 |
Time course 12hI-12hNI | 1.01242 | 0.867 |
Time course 36hI-36hNI | 1.01851 | 0.799 |
Time course 60hI-60hNI | 1.15339 | 0.025 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.02429 | 0.408 |
transgenic ySAMdc/azygous control (breaker) | 0.96875 | 1 |
transgenic ySAMdc/azygous control (red) | 0.96125 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.11687 | 0.036 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.03195 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.74695 | 0.172 |
Manapal/WT (break) | 0.90413 | 1 |
Manapal/WT (red) | 0.98617 | 0.863 |
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