TFGD
Home Expression Metabolite sRNA Links Contact

Expression of 1-1-5.1.8.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.103420.851
27DAP/17DAP1.239830.766
39DAP/27DAP0.759740.327
41DAP/39DAP1.1340.545
42DAP/41DAP1.019371
43DAP/42DAP1.031521
47DAP/43DAP1.164320.584
52DAP/47DAP0.668290.184
57DAP/52DAP1.060771

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.945810.308
17DAP/reference1.176980.08
27DAP/reference1.039280.735
39DAP/reference1.031620.903
41DAP/reference1.1560.393
42DAP/reference0.909930.02
43DAP/reference1.020990.787
47DAP/reference0.969010.366
52DAP/reference1.106560.498
57DAP/reference1.007271

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.901770.299
27DAP/17DAP1.012860.968
39DAP/27DAP1.086630.496
41DAP/39DAP1.075450.887
42DAP/41DAP0.991560.841
43DAP/42DAP1.071910.25
47DAP/43DAP1.000171
52DAP/47DAP0.984870.93
57DAP/52DAP0.972790.685
57DAP/7DAP1.123961

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.005910.758
17DAP/reference1.032181
27DAP/reference0.95710.303
39DAP/reference0.975760.552
41DAP/reference0.955510.375
42DAP/reference0.944950.355
43DAP/reference0.988180.421
47DAP/reference0.781070.128
52DAP/reference0.805810.043
57DAP/reference0.795390.034

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.161390.094
17DAP/reference1.097060.543
27DAP/reference0.938560.249
39DAP/reference0.949270.348
41DAP/reference0.882590.183
42DAP/reference0.995060.534
43DAP/reference1.018280.831
47DAP/reference0.980870.512
52DAP/reference1.000020.713
57DAP/reference0.947280.46

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.212550.069
17DAP/reference0.961440.528
27DAP/reference0.903790.23
39DAP/reference0.870810.043
41DAP/reference0.903010.293
42DAP/reference0.771890.041
43DAP/reference0.768360.032
47DAP/reference0.808630.174
52DAP/reference0.931470.551
57DAP/reference0.764440.048

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.952621
26DAP/20DAP0.832390.244
34DAP/26DAP1.072740.819
51DAP/34DAP0.91480.508
52DAP/51DAP0.990111
53DAP/52DAP1.161730.662
55DAP/53DAP1.0840.656
57DAP/55DAP1.045070.87
62DAP/57DAP1.271650.115
68DAP/62DAP0.982540.863
68DAP/14DAP0.855961

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.919430.224

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.57864N/A
Mature Green Tomato/Ripe Tomato1.2420.835
Immature Eggplant/Mature Eggplant2.221670.05
Ripe Pepper/Ripe Tomato1.490360.258
Mature Eggplant/Ripe Tomato1.732460.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.3328N/A
1-1-2/M821.072331
12-2/M82N/AN/A
12-4/M820.981791
1-3/M821.091310.26
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M820.69808N/A
3-2/M820.999781
4-1-1/M82N/AN/A
4-1/M821.07046N/A
4-3-2/M82N/AN/A
4-3/M821.098361
5-3/M821.01711
6-2/M82N/AN/A
6-3/M821.34852N/A
7-1/M820.9488N/A
7-2/M820.948730.796
9-3-2/M820.928621

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled1.26842N/A
IL1-4/WTpooled1.755481
WT/WTpooled0.99151

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.901990.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.114830.921
DC3000/delta hrp 6h0.962990.95
DC3000/delta hrp 12h1.046541
DC3000/delta hrp 24h1.167350.438

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.147170.384
DC3000 delta B/DC3000 delta AB1.005090.771

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.08671
Exp 60h1.106391

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.018981
Var 0h1.038370.98
Var 12h I row2-row11.100410.406
Var 12h NI row2-row10.8690.443
Var 36h I row2-row10.984671
Var 36h NI row2-row11.034631
Var 60h I row2-row11.185380.562
Var 60h NI row2-row11.210380.904
Time course 0hI-0hNI1.07190.719
Time course 12hI-12hNI1.012420.867
Time course 36hI-36hNI1.018510.799
Time course 60hI-60hNI1.153390.025

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.024290.408
transgenic ySAMdc/azygous control (breaker)0.968751
transgenic ySAMdc/azygous control (red)0.961251

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.116870.036

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.031951

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.746950.172
Manapal/WT (break)0.904131
Manapal/WT (red)0.986170.863