Tomato Functional Genomics Database (TFGD)

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Expression of 1-1-5.2.1.1

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.51505	0.823
27DAP/17DAP	1.43551	0.688
39DAP/27DAP	1.75336	0.864
41DAP/39DAP	0.88173	0.579
42DAP/41DAP	0.6769	0.774
43DAP/42DAP	0.9563	0.895
47DAP/43DAP	1.5285	0.909
52DAP/47DAP	1.94649	0.195
57DAP/52DAP	0.88525	0.857

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	N/A	N/A
17DAP/reference	2.38239	N/A
27DAP/reference	3.43594	N/A
39DAP/reference	0.98519	N/A
41DAP/reference	0.78172	0.341
42DAP/reference	1.1542	0.645
43DAP/reference	0.99712	0.924
47DAP/reference	1.03422	1
52DAP/reference	2.04466	0.023
57DAP/reference	0.6387	0.008

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.45808	0.086
27DAP/17DAP	1.46099	0.909
39DAP/27DAP	5.80893	0.526
41DAP/39DAP	0.6275	0.013
42DAP/41DAP	0.87365	0.456
43DAP/42DAP	N/A	N/A
47DAP/43DAP	1.0045	0.989
52DAP/47DAP	6.97281	N/A
57DAP/52DAP	0.92763	0.737
57DAP/7DAP	N/A	N/A

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.72651	0.1
17DAP/reference	0.91277	0.22
27DAP/reference	1.29692	0.023
39DAP/reference	0.71416	0.011
41DAP/reference	0.65831	0.009
42DAP/reference	0.78641	0.027
43DAP/reference	0.66254	0.014
47DAP/reference	0.6319	0.101
52DAP/reference	0.66494	0.013
57DAP/reference	0.6045	0.006

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.38788	N/A
17DAP/reference	N/A	N/A
27DAP/reference	3.45138	N/A
39DAP/reference	N/A	N/A
41DAP/reference	1.56518	N/A
42DAP/reference	0.67714	N/A
43DAP/reference	2.47779	0.011
47DAP/reference	1.3831	N/A
52DAP/reference	N/A	N/A
57DAP/reference	0.60084	0.116

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.77234	0.055
17DAP/reference	1.02692	1
27DAP/reference	0.66965	0.028
39DAP/reference	0.68693	0.007
41DAP/reference	0.97116	0.56
42DAP/reference	1.14982	0.194
43DAP/reference	0.7385	0.098
47DAP/reference	0.76626	0.348
52DAP/reference	2.10271	0.153
57DAP/reference	0.88043	N/A

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.43799	0.006
26DAP/20DAP	0.59235	N/A
34DAP/26DAP	1.32916	1
51DAP/34DAP	N/A	N/A
52DAP/51DAP	0.86107	1
53DAP/52DAP	6.15875	0.723
55DAP/53DAP	1.17846	N/A
57DAP/55DAP	N/A	N/A
62DAP/57DAP	N/A	N/A
68DAP/62DAP	1.48355	N/A
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	3.66599	0.064

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.10638	1
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	0.96499	1
IL7-3/WTpooled	0.60844	N/A
IL12-4/WTpooled	1.00973	N/A
IL1-4/WTpooled	0.98337	1
WT/WTpooled	0.82767	N/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	0.45927	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	1.12724	1
Manapal/WT (red)	N/A	N/A