Expression of 1-1-5.2.12.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.341650.157
27DAP/17DAP0.680890.173
39DAP/27DAP1.162380.858
41DAP/39DAP1.226310.224
42DAP/41DAP1.443160.691
43DAP/42DAP1.758570.122
47DAP/43DAP1.545610.226
52DAP/47DAP1.494670.353
57DAP/52DAP1.001050.971

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.401940.009
17DAP/reference1.205910.193
27DAP/reference1.125860.065
39DAP/reference1.630850.026
41DAP/reference1.527130.021
42DAP/reference2.273230.001
43DAP/reference2.011150.007
47DAP/reference4.467280.001
52DAP/reference2.88660.008
57DAP/reference2.660590.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.94917
27DAP/17DAP0.639490.363
39DAP/27DAP0.885680.367
41DAP/39DAP2.053410.017
42DAP/41DAP3.816620.011
43DAP/42DAP1.283480.585
47DAP/43DAPN/AN/A
52DAP/47DAP0.655640.603
57DAP/52DAP1.05580.902
57DAP/7DAP1.5250.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.720940.07
17DAP/reference0.677060.02
27DAP/reference1.038121
39DAP/reference1.240020.046
41DAP/reference0.686370.056
42DAP/reference0.972390.458
43DAP/reference0.969770.385
47DAP/reference1.638780.067
52DAP/reference0.728560.061
57DAP/reference0.462280.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.222910.516
17DAP/reference1.499020.009
27DAP/reference1.194590.283
39DAP/reference1.531320.035
41DAP/reference1.252140.031
42DAP/reference1.208380.089
43DAP/reference1.454930.063
47DAP/reference1.559620.008
52DAP/reference1.338370.01
57DAP/reference1.464170.019

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.679740.052
17DAP/reference0.981940.499
27DAP/reference0.625960.029
39DAP/reference0.821150.022
41DAP/reference0.837680.132
42DAP/reference1.977570.007
43DAP/reference2.351430.006
47DAP/reference1.9240.046
52DAP/reference1.699790.032
57DAP/reference1.518560.01

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP2.744940.966
26DAP/20DAPN/AN/A
34DAP/26DAP0.944850.961
51DAP/34DAPN/AN/A
52DAP/51DAP1.54798
53DAP/52DAP6.710830.022
55DAP/53DAP1.192920.434
57DAP/55DAP1.295740.71
62DAP/57DAP0.349060.028
68DAP/62DAP0.40092
68DAP/14DAP0.925051

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.57065

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.248910.017
Immature Eggplant/Mature Eggplant9.55649
Ripe Pepper/Ripe Tomato0.199840.224
Mature Eggplant/Ripe Tomato0.241360.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.060671
1-1-2/M821.202810.977
12-2/M820.82529
12-4/M821.024220.694
1-3/M820.998421
2-1-1/M820.896250.465
2-1/M821.0302
2-6/M821.080250.594
3-2/M820.086540.428
4-1-1/M820.947571
4-1/M821.50941
4-3-2/M820.895841
4-3/M821.049091
5-3/M820.788861
6-2/M821.035641
6-3/M820.796560.982
7-1/M820.895071
7-2/M821.07176
9-3-2/M821.161181

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.823630.581
IL1-4/WTpooled0.958960.834
WT/WTpooled0.88731

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.060940.921
DC3000/delta hrp 6h1.528551
DC3000/delta hrp 12h1.319121
DC3000/delta hrp 24h0.695810.035

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.910711
Exp 36h0.632960.456
Exp 60h0.709410.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.772160.933
Var 12h I row2-row10.692130.363
Var 12h NI row2-row10.998761
Var 36h I row2-row10.949451
Var 36h NI row2-row11.227410.482
Var 60h I row2-row11.242830.543
Var 60h NI row2-row11.038121
Time course 0hI-0hNI0.941150.861
Time course 12hI-12hNI0.94081
Time course 36hI-36hNI1.09113
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.007170.931
transgenic ySAMdc/azygous control (breaker)0.492860.142
transgenic ySAMdc/azygous control (red)0.773511

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.747640.05

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.478080.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.71580.172
Manapal/WT (break)0.971861
Manapal/WT (red)0.951470.728