Expression of 1-1-5.2.12.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.34165 | 0.157 |
27DAP/17DAP | 0.68089 | 0.173 |
39DAP/27DAP | 1.16238 | 0.858 |
41DAP/39DAP | 1.22631 | 0.224 |
42DAP/41DAP | 1.44316 | 0.691 |
43DAP/42DAP | 1.75857 | 0.122 |
47DAP/43DAP | 1.54561 | 0.226 |
52DAP/47DAP | 1.49467 | 0.353 |
57DAP/52DAP | 1.00105 | 0.971 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.40194 | 0.009 |
17DAP/reference | 1.20591 | 0.193 |
27DAP/reference | 1.12586 | 0.065 |
39DAP/reference | 1.63085 | 0.026 |
41DAP/reference | 1.52713 | 0.021 |
42DAP/reference | 2.27323 | 0.001 |
43DAP/reference | 2.01115 | 0.007 |
47DAP/reference | 4.46728 | 0.001 |
52DAP/reference | 2.8866 | 0.008 |
57DAP/reference | 2.66059 | 0.008 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94917 | |
27DAP/17DAP | 0.63949 | 0.363 |
39DAP/27DAP | 0.88568 | 0.367 |
41DAP/39DAP | 2.05341 | 0.017 |
42DAP/41DAP | 3.81662 | 0.011 |
43DAP/42DAP | 1.28348 | 0.585 |
47DAP/43DAP | N/A | N/A |
52DAP/47DAP | 0.65564 | 0.603 |
57DAP/52DAP | 1.0558 | 0.902 |
57DAP/7DAP | 1.525 | 0.249 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.72094 | 0.07 |
17DAP/reference | 0.67706 | 0.02 |
27DAP/reference | 1.03812 | 1 |
39DAP/reference | 1.24002 | 0.046 |
41DAP/reference | 0.68637 | 0.056 |
42DAP/reference | 0.97239 | 0.458 |
43DAP/reference | 0.96977 | 0.385 |
47DAP/reference | 1.63878 | 0.067 |
52DAP/reference | 0.72856 | 0.061 |
57DAP/reference | 0.46228 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22291 | 0.516 |
17DAP/reference | 1.49902 | 0.009 |
27DAP/reference | 1.19459 | 0.283 |
39DAP/reference | 1.53132 | 0.035 |
41DAP/reference | 1.25214 | 0.031 |
42DAP/reference | 1.20838 | 0.089 |
43DAP/reference | 1.45493 | 0.063 |
47DAP/reference | 1.55962 | 0.008 |
52DAP/reference | 1.33837 | 0.01 |
57DAP/reference | 1.46417 | 0.019 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.67974 | 0.052 |
17DAP/reference | 0.98194 | 0.499 |
27DAP/reference | 0.62596 | 0.029 |
39DAP/reference | 0.82115 | 0.022 |
41DAP/reference | 0.83768 | 0.132 |
42DAP/reference | 1.97757 | 0.007 |
43DAP/reference | 2.35143 | 0.006 |
47DAP/reference | 1.924 | 0.046 |
52DAP/reference | 1.69979 | 0.032 |
57DAP/reference | 1.51856 | 0.01 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 2.74494 | 0.966 |
26DAP/20DAP | N/A | N/A |
34DAP/26DAP | 0.94485 | 0.961 |
51DAP/34DAP | N/A | N/A |
52DAP/51DAP | 1.54798 | |
53DAP/52DAP | 6.71083 | 0.022 |
55DAP/53DAP | 1.19292 | 0.434 |
57DAP/55DAP | 1.29574 | 0.71 |
62DAP/57DAP | 0.34906 | 0.028 |
68DAP/62DAP | 0.40092 | |
68DAP/14DAP | 0.92505 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.57065 | |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.24891 | 0.017 |
Immature Eggplant/Mature Eggplant | 9.55649 | |
Ripe Pepper/Ripe Tomato | 0.19984 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.24136 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.06067 | 1 |
1-1-2/M82 | 1.20281 | 0.977 |
12-2/M82 | 0.82529 | |
12-4/M82 | 1.02422 | 0.694 |
1-3/M82 | 0.99842 | 1 |
2-1-1/M82 | 0.89625 | 0.465 |
2-1/M82 | 1.0302 | |
2-6/M82 | 1.08025 | 0.594 |
3-2/M82 | 0.08654 | 0.428 |
4-1-1/M82 | 0.94757 | 1 |
4-1/M82 | 1.5094 | 1 |
4-3-2/M82 | 0.89584 | 1 |
4-3/M82 | 1.04909 | 1 |
5-3/M82 | 0.78886 | 1 |
6-2/M82 | 1.03564 | 1 |
6-3/M82 | 0.79656 | 0.982 |
7-1/M82 | 0.89507 | 1 |
7-2/M82 | 1.07176 | |
9-3-2/M82 | 1.16118 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.82363 | 0.581 |
IL1-4/WTpooled | 0.95896 | 0.834 |
WT/WTpooled | 0.8873 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06094 | 0.921 |
DC3000/delta hrp 6h | 1.52855 | 1 |
DC3000/delta hrp 12h | 1.31912 | 1 |
DC3000/delta hrp 24h | 0.69581 | 0.035 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.91071 | 1 |
Exp 36h | 0.63296 | 0.456 |
Exp 60h | 0.70941 | 0.586 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.77216 | 0.933 |
Var 12h I row2-row1 | 0.69213 | 0.363 |
Var 12h NI row2-row1 | 0.99876 | 1 |
Var 36h I row2-row1 | 0.94945 | 1 |
Var 36h NI row2-row1 | 1.22741 | 0.482 |
Var 60h I row2-row1 | 1.24283 | 0.543 |
Var 60h NI row2-row1 | 1.03812 | 1 |
Time course 0hI-0hNI | 0.94115 | 0.861 |
Time course 12hI-12hNI | 0.94081 | |
Time course 36hI-36hNI | 1.09113 | |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.00717 | 0.931 |
transgenic ySAMdc/azygous control (breaker) | 0.49286 | 0.142 |
transgenic ySAMdc/azygous control (red) | 0.77351 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.74764 | 0.05 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.47808 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.7158 | 0.172 |
Manapal/WT (break) | 0.97186 | 1 |
Manapal/WT (red) | 0.95147 | 0.728 |
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