Expression of 1-1-5.2.4.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.053070.838
27DAP/17DAP1.088130.88
39DAP/27DAP1.266780.332
41DAP/39DAP1.015190.96
42DAP/41DAP1.036110.962
43DAP/42DAP1.057461
47DAP/43DAP1.215440.261
52DAP/47DAP1.06810.96
57DAP/52DAP0.900410.666

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.920560.07
17DAP/reference1.03580.412
27DAP/reference0.952190.275
39DAP/reference0.974360.704
41DAP/reference0.964120.667
42DAP/reference0.894270.012
43DAP/reference0.914540.061
47DAP/reference0.917690.03
52DAP/reference0.916230.152
57DAP/reference0.855120.031

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.938290.388
27DAP/17DAP1.018760.924
39DAP/27DAP1.083310.478
41DAP/39DAP1.096430.69
42DAP/41DAP1.022040.947
43DAP/42DAP0.968640.558
47DAP/43DAP0.996020.99
52DAP/47DAP1.085350.676
57DAP/52DAP0.968270.591
57DAP/7DAP1.08691

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.040080.747
17DAP/reference1.070690.162
27DAP/reference1.424040.014
39DAP/reference1.448830.006
41DAP/reference1.351370.022
42DAP/reference1.571460.009
43DAP/reference1.501650.007
47DAP/reference1.361880.145
52DAP/reference1.879760.007
57DAP/reference1.884520.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.069030.284
17DAP/reference1.026220.806
27DAP/reference1.140380.974
39DAP/reference0.97420.428
41DAP/reference0.938140.299
42DAP/reference0.984390.534
43DAP/reference0.941020.385
47DAP/reference0.933150.159
52DAP/reference0.963250.433
57DAP/reference0.979620.581

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.008371
17DAP/reference0.999450.855
27DAP/reference1.290550.017
39DAP/reference1.334950.029
41DAP/reference1.18080.257
42DAP/reference1.437430.233
43DAP/reference1.176720.524
47DAP/reference0.95450.357
52DAP/reference1.429820.167
57DAP/reference0.780260.048

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.066660.945
26DAP/20DAP0.930160.512
34DAP/26DAP0.920450.419
51DAP/34DAP1.037030.814
52DAP/51DAP1.019890.888
53DAP/52DAP1.036080.921
55DAP/53DAP1.029950.964
57DAP/55DAP1.043630.87
62DAP/57DAP1.190850.004
68DAP/62DAP0.923790.406
68DAP/14DAP0.954441

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.052150.326

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.796480.268
Mature Green Tomato/Ripe Tomato1.405390.048
Immature Eggplant/Mature Eggplant0.810630.448
Ripe Pepper/Ripe Tomato1.384231
Mature Eggplant/Ripe Tomato0.88760.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.978890.961
1-1-2/M821.00703
12-2/M821.15203
12-4/M821.049311
1-3/M820.92481
2-1-1/M821.2918
2-1/M82N/AN/A
2-6/M821.131230.695
3-2/M820.95721
4-1-1/M820.882311
4-1/M820.72007
4-3-2/M821.084781
4-3/M820.82060.72
5-3/M820.999051
6-2/M82N/AN/A
6-3/M821.02774
7-1/M820.900161
7-2/M820.901750.434
9-3-2/M820.994261

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.69752
IL2-6/WTpooled0.801520.348
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.80040.25
IL12-4/WTpooled0.956891
IL1-4/WTpooled0.795810.699
WT/WTpooled1.192231

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.239181

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.032310.921
DC3000/delta hrp 6h0.794570.95
DC3000/delta hrp 12h1.058561
DC3000/delta hrp 24h1.07290.483

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.914650.46
DC3000 delta B/DC3000 delta AB0.817680.025

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.604151
Exp 36h1.105051
Exp 60h1.016181

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.940340.246
transgenic ySAMdc/azygous control (breaker)1.381830.172
transgenic ySAMdc/azygous control (red)1.051411

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.994130.444

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.029350.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.85271
Manapal/WT (break)0.983751
Manapal/WT (red)1.187570.413