Expression of 1-1-5.2.4.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05307 | 0.838 |
27DAP/17DAP | 1.08813 | 0.88 |
39DAP/27DAP | 1.26678 | 0.332 |
41DAP/39DAP | 1.01519 | 0.96 |
42DAP/41DAP | 1.03611 | 0.962 |
43DAP/42DAP | 1.05746 | 1 |
47DAP/43DAP | 1.21544 | 0.261 |
52DAP/47DAP | 1.0681 | 0.96 |
57DAP/52DAP | 0.90041 | 0.666 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92056 | 0.07 |
17DAP/reference | 1.0358 | 0.412 |
27DAP/reference | 0.95219 | 0.275 |
39DAP/reference | 0.97436 | 0.704 |
41DAP/reference | 0.96412 | 0.667 |
42DAP/reference | 0.89427 | 0.012 |
43DAP/reference | 0.91454 | 0.061 |
47DAP/reference | 0.91769 | 0.03 |
52DAP/reference | 0.91623 | 0.152 |
57DAP/reference | 0.85512 | 0.031 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93829 | 0.388 |
27DAP/17DAP | 1.01876 | 0.924 |
39DAP/27DAP | 1.08331 | 0.478 |
41DAP/39DAP | 1.09643 | 0.69 |
42DAP/41DAP | 1.02204 | 0.947 |
43DAP/42DAP | 0.96864 | 0.558 |
47DAP/43DAP | 0.99602 | 0.99 |
52DAP/47DAP | 1.08535 | 0.676 |
57DAP/52DAP | 0.96827 | 0.591 |
57DAP/7DAP | 1.0869 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04008 | 0.747 |
17DAP/reference | 1.07069 | 0.162 |
27DAP/reference | 1.42404 | 0.014 |
39DAP/reference | 1.44883 | 0.006 |
41DAP/reference | 1.35137 | 0.022 |
42DAP/reference | 1.57146 | 0.009 |
43DAP/reference | 1.50165 | 0.007 |
47DAP/reference | 1.36188 | 0.145 |
52DAP/reference | 1.87976 | 0.007 |
57DAP/reference | 1.88452 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06903 | 0.284 |
17DAP/reference | 1.02622 | 0.806 |
27DAP/reference | 1.14038 | 0.974 |
39DAP/reference | 0.9742 | 0.428 |
41DAP/reference | 0.93814 | 0.299 |
42DAP/reference | 0.98439 | 0.534 |
43DAP/reference | 0.94102 | 0.385 |
47DAP/reference | 0.93315 | 0.159 |
52DAP/reference | 0.96325 | 0.433 |
57DAP/reference | 0.97962 | 0.581 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00837 | 1 |
17DAP/reference | 0.99945 | 0.855 |
27DAP/reference | 1.29055 | 0.017 |
39DAP/reference | 1.33495 | 0.029 |
41DAP/reference | 1.1808 | 0.257 |
42DAP/reference | 1.43743 | 0.233 |
43DAP/reference | 1.17672 | 0.524 |
47DAP/reference | 0.9545 | 0.357 |
52DAP/reference | 1.42982 | 0.167 |
57DAP/reference | 0.78026 | 0.048 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.06666 | 0.945 |
26DAP/20DAP | 0.93016 | 0.512 |
34DAP/26DAP | 0.92045 | 0.419 |
51DAP/34DAP | 1.03703 | 0.814 |
52DAP/51DAP | 1.01989 | 0.888 |
53DAP/52DAP | 1.03608 | 0.921 |
55DAP/53DAP | 1.02995 | 0.964 |
57DAP/55DAP | 1.04363 | 0.87 |
62DAP/57DAP | 1.19085 | 0.004 |
68DAP/62DAP | 0.92379 | 0.406 |
68DAP/14DAP | 0.95444 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.05215 | 0.326 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.79648 | 0.268 |
Mature Green Tomato/Ripe Tomato | 1.40539 | 0.048 |
Immature Eggplant/Mature Eggplant | 0.81063 | 0.448 |
Ripe Pepper/Ripe Tomato | 1.38423 | 1 |
Mature Eggplant/Ripe Tomato | 0.8876 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.97889 | 0.961 |
1-1-2/M82 | 1.00703 | |
12-2/M82 | 1.15203 | |
12-4/M82 | 1.04931 | 1 |
1-3/M82 | 0.9248 | 1 |
2-1-1/M82 | 1.2918 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.13123 | 0.695 |
3-2/M82 | 0.9572 | 1 |
4-1-1/M82 | 0.88231 | 1 |
4-1/M82 | 0.72007 | |
4-3-2/M82 | 1.08478 | 1 |
4-3/M82 | 0.8206 | 0.72 |
5-3/M82 | 0.99905 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.02774 | |
7-1/M82 | 0.90016 | 1 |
7-2/M82 | 0.90175 | 0.434 |
9-3-2/M82 | 0.99426 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.69752 | |
IL2-6/WTpooled | 0.80152 | 0.348 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.8004 | 0.25 |
IL12-4/WTpooled | 0.95689 | 1 |
IL1-4/WTpooled | 0.79581 | 0.699 |
WT/WTpooled | 1.19223 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.23918 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03231 | 0.921 |
DC3000/delta hrp 6h | 0.79457 | 0.95 |
DC3000/delta hrp 12h | 1.05856 | 1 |
DC3000/delta hrp 24h | 1.0729 | 0.483 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.91465 | 0.46 |
DC3000 delta B/DC3000 delta AB | 0.81768 | 0.025 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.60415 | 1 |
Exp 36h | 1.10505 | 1 |
Exp 60h | 1.01618 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.94034 | 0.246 |
transgenic ySAMdc/azygous control (breaker) | 1.38183 | 0.172 |
transgenic ySAMdc/azygous control (red) | 1.05141 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99413 | 0.444 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.02935 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.8527 | 1 |
Manapal/WT (break) | 0.98375 | 1 |
Manapal/WT (red) | 1.18757 | 0.413 |
|
|