Expression of 1-1-5.2.4.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.34757 | 0.148 |
27DAP/17DAP | 1.00865 | 0.978 |
39DAP/27DAP | 1.0495 | 0.84 |
41DAP/39DAP | 0.85346 | 0.447 |
42DAP/41DAP | 1.13476 | 0.852 |
43DAP/42DAP | 1.04697 | 1 |
47DAP/43DAP | 1.30331 | 0.633 |
52DAP/47DAP | 0.88307 | 0.668 |
57DAP/52DAP | 1.07767 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94137 | 0.371 |
17DAP/reference | 1.24651 | 0.342 |
27DAP/reference | 1.04106 | 0.709 |
39DAP/reference | 1.05228 | 0.654 |
41DAP/reference | 1.0758 | 0.624 |
42DAP/reference | 0.98138 | 0.384 |
43DAP/reference | 1.11634 | 0.133 |
47DAP/reference | 0.9728 | 0.3 |
52DAP/reference | 0.97436 | 0.475 |
57DAP/reference | 1.06135 | 0.548 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.97258 | 0.036 |
27DAP/17DAP | 0.61955 | 0.151 |
39DAP/27DAP | 0.93039 | 0.66 |
41DAP/39DAP | 1.02804 | 0.895 |
42DAP/41DAP | 1.06828 | 0.872 |
43DAP/42DAP | 0.66802 | 0.022 |
47DAP/43DAP | 0.81992 | 0.026 |
52DAP/47DAP | 1.22817 | 0.46 |
57DAP/52DAP | 1.19105 | 0.335 |
57DAP/7DAP | 0.7127 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.2254 | 0.124 |
17DAP/reference | 1.17044 | 0.009 |
27DAP/reference | 1.10192 | 0.088 |
39DAP/reference | 1.29412 | 0.023 |
41DAP/reference | 1.07617 | 0.402 |
42DAP/reference | 1.09179 | 0.308 |
43DAP/reference | 1.39455 | 0.008 |
47DAP/reference | 1.1434 | 0.67 |
52DAP/reference | 1.06774 | 0.832 |
57DAP/reference | 1.2386 | 0.066 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.82456 | 0.182 |
17DAP/reference | 1.20044 | 0.644 |
27DAP/reference | 0.93289 | 0.167 |
39DAP/reference | 1.09034 | 0.639 |
41DAP/reference | 0.96139 | 0.307 |
42DAP/reference | 0.86695 | 0.089 |
43DAP/reference | 0.92314 | 0.414 |
47DAP/reference | 0.98918 | 0.609 |
52DAP/reference | 1.03332 | 0.838 |
57DAP/reference | 0.91261 | 0.338 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10039 | 0.303 |
17DAP/reference | 1.02722 | 0.728 |
27DAP/reference | 1.01402 | 0.903 |
39DAP/reference | 1.0178 | 0.813 |
41DAP/reference | 1.01723 | 1 |
42DAP/reference | 1.11628 | 0.209 |
43DAP/reference | 1.02394 | 0.949 |
47DAP/reference | 1.13139 | 0.76 |
52DAP/reference | 1.23273 | 0.134 |
57DAP/reference | 1.18261 | 0.09 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.06999 | 0.966 |
26DAP/20DAP | 0.83597 | 1 |
34DAP/26DAP | 0.64708 | 0.113 |
51DAP/34DAP | 1.41602 | 0.137 |
52DAP/51DAP | 1.18063 | 0.404 |
53DAP/52DAP | 1.0401 | 1 |
55DAP/53DAP | 1.01556 | 1 |
57DAP/55DAP | 1.05497 | 0.955 |
62DAP/57DAP | 2.05111 | 0.133 |
68DAP/62DAP | 1.20261 | 0.89 |
68DAP/14DAP | 1.25585 | 0.139 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.05454 | 0.865 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.1665 | 0.075 |
Mature Green Tomato/Ripe Tomato | 1.93558 | 0.119 |
Immature Eggplant/Mature Eggplant | 1.08219 | 0.633 |
Ripe Pepper/Ripe Tomato | 0.51276 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.2906 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.06263 | 1 |
1-1-2/M82 | 0.9636 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.75551 | 0.33 |
1-3/M82 | 1.11442 | |
2-1-1/M82 | 0.66292 | 0.683 |
2-1/M82 | 0.69175 | 0.345 |
2-6/M82 | 0.58866 | 0.501 |
3-2/M82 | 2.4193 | |
4-1-1/M82 | 0.98586 | 1 |
4-1/M82 | 0.95745 | 1 |
4-3-2/M82 | 0.6722 | 0.487 |
4-3/M82 | 0.81237 | 1 |
5-3/M82 | 1.06121 | 1 |
6-2/M82 | 0.63426 | |
6-3/M82 | 1.36256 | 1 |
7-1/M82 | 1.0732 | |
7-2/M82 | 0.86171 | 0.599 |
9-3-2/M82 | 0.74088 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.61543 | |
IL1-4/WTpooled | 0.98284 | |
WT/WTpooled | 1.04933 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.95304 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.13996 | 0.692 |
DC3000/delta hrp 6h | 1.03348 | 1 |
DC3000/delta hrp 12h | 1.05059 | 1 |
DC3000/delta hrp 24h | 0.9776 | 0.887 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.92078 | |
DC3000 delta B/DC3000 delta AB | 0.57688 | 0.047 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.72452 | 1 |
Exp 36h | 0.8866 | 0.699 |
Exp 60h | 0.97009 | 0.754 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.2293 | 0.294 |
transgenic ySAMdc/azygous control (breaker) | 1.23767 | 1 |
transgenic ySAMdc/azygous control (red) | 0.93035 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.23003 | 0.035 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.4499 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.00337 | 1 |
Manapal/WT (break) | 1.16938 | 0.381 |
Manapal/WT (red) | 1.81024 | 0.15 |
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