Expression of 1-1-5.2.4.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.347570.148
27DAP/17DAP1.008650.978
39DAP/27DAP1.04950.84
41DAP/39DAP0.853460.447
42DAP/41DAP1.134760.852
43DAP/42DAP1.046971
47DAP/43DAP1.303310.633
52DAP/47DAP0.883070.668
57DAP/52DAP1.077670.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.941370.371
17DAP/reference1.246510.342
27DAP/reference1.041060.709
39DAP/reference1.052280.654
41DAP/reference1.07580.624
42DAP/reference0.981380.384
43DAP/reference1.116340.133
47DAP/reference0.97280.3
52DAP/reference0.974360.475
57DAP/reference1.061350.548

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.972580.036
27DAP/17DAP0.619550.151
39DAP/27DAP0.930390.66
41DAP/39DAP1.028040.895
42DAP/41DAP1.068280.872
43DAP/42DAP0.668020.022
47DAP/43DAP0.819920.026
52DAP/47DAP1.228170.46
57DAP/52DAP1.191050.335
57DAP/7DAP0.7127

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.22540.124
17DAP/reference1.170440.009
27DAP/reference1.101920.088
39DAP/reference1.294120.023
41DAP/reference1.076170.402
42DAP/reference1.091790.308
43DAP/reference1.394550.008
47DAP/reference1.14340.67
52DAP/reference1.067740.832
57DAP/reference1.23860.066

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.824560.182
17DAP/reference1.200440.644
27DAP/reference0.932890.167
39DAP/reference1.090340.639
41DAP/reference0.961390.307
42DAP/reference0.866950.089
43DAP/reference0.923140.414
47DAP/reference0.989180.609
52DAP/reference1.033320.838
57DAP/reference0.912610.338

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.100390.303
17DAP/reference1.027220.728
27DAP/reference1.014020.903
39DAP/reference1.01780.813
41DAP/reference1.017231
42DAP/reference1.116280.209
43DAP/reference1.023940.949
47DAP/reference1.131390.76
52DAP/reference1.232730.134
57DAP/reference1.182610.09

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.069990.966
26DAP/20DAP0.835971
34DAP/26DAP0.647080.113
51DAP/34DAP1.416020.137
52DAP/51DAP1.180630.404
53DAP/52DAP1.04011
55DAP/53DAP1.015561
57DAP/55DAP1.054970.955
62DAP/57DAP2.051110.133
68DAP/62DAP1.202610.89
68DAP/14DAP1.255850.139

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.054540.865

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.16650.075
Mature Green Tomato/Ripe Tomato1.935580.119
Immature Eggplant/Mature Eggplant1.082190.633
Ripe Pepper/Ripe Tomato0.512760.224
Mature Eggplant/Ripe Tomato0.29060.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.062631
1-1-2/M820.96361
12-2/M82N/AN/A
12-4/M820.755510.33
1-3/M821.11442
2-1-1/M820.662920.683
2-1/M820.691750.345
2-6/M820.588660.501
3-2/M822.4193
4-1-1/M820.985861
4-1/M820.957451
4-3-2/M820.67220.487
4-3/M820.812371
5-3/M821.061211
6-2/M820.63426
6-3/M821.362561
7-1/M821.0732
7-2/M820.861710.599
9-3-2/M820.740880.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.61543
IL1-4/WTpooled0.98284
WT/WTpooled1.049331

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.953040.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.139960.692
DC3000/delta hrp 6h1.033481
DC3000/delta hrp 12h1.050591
DC3000/delta hrp 24h0.97760.887

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.92078
DC3000 delta B/DC3000 delta AB0.576880.047

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.724521
Exp 36h0.88660.699
Exp 60h0.970090.754

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.22930.294
transgenic ySAMdc/azygous control (breaker)1.237671
transgenic ySAMdc/azygous control (red)0.930351

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.230030.035

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.44990.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.003371
Manapal/WT (break)1.169380.381
Manapal/WT (red)1.810240.15