Tomato Functional Genomics Database (TFGD)

Expression of 1-1-5.2.7.2

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.9629	0.743
27DAP/17DAP	0.78575	0.225
39DAP/27DAP	1.07515	0.907
41DAP/39DAP	1.24385	0.584
42DAP/41DAP	1.33054	0.536
43DAP/42DAP	1.13934	1
47DAP/43DAP	1.41152	0.459
52DAP/47DAP	0.89397	0.685
57DAP/52DAP	0.94613	0.926

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.33547	0.872
17DAP/reference	1.11368	1
27DAP/reference	0.846	0.61
39DAP/reference	1.53699	0.119
41DAP/reference	0.82869
42DAP/reference	1.23925	0.656
43DAP/reference	1.36641	0.061
47DAP/reference	0.99152	0.674
52DAP/reference	1.27262	0.453
57DAP/reference	0.99685	0.805

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.162	0.34
27DAP/17DAP	0.84264	0.363
39DAP/27DAP	1.05527	0.799
41DAP/39DAP	0.88549	0.481
42DAP/41DAP	1.19338	0.124
43DAP/42DAP	1.94209	0.014
47DAP/43DAP	1.10322	0.865
52DAP/47DAP	0.92703	0.726
57DAP/52DAP	0.96993	0.721
57DAP/7DAP	1.0716	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.98625	0.758
17DAP/reference	0.71072	0.049
27DAP/reference	0.54896
39DAP/reference	0.91527	0.307
41DAP/reference	0.89664	0.271
42DAP/reference	0.78409	0.095
43DAP/reference	0.98438	0.527
47DAP/reference	1.14088	0.7
52DAP/reference	1.18712	0.599
57DAP/reference	1.0363	0.67

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.78767	0.119
17DAP/reference	0.7717	0.023
27DAP/reference	0.71299	0.195
39DAP/reference	0.79829	0.165
41DAP/reference	0.88491	0.412
42DAP/reference	0.77291	0.289
43DAP/reference	0.76858	0.072
47DAP/reference	1.05625	0.795
52DAP/reference	1.20343	0.417
57DAP/reference	1.15193	0.581

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.5887	0.23
17DAP/reference	1.22193	0.371
27DAP/reference	0.92815	0.49
39DAP/reference	1.12431	0.858
41DAP/reference	1.17925	0.637
42DAP/reference	1.47222	0.171
43DAP/reference	1.08008	0.796
47DAP/reference	1.36651	0.005
52DAP/reference	1.31373	0.393
57DAP/reference	1.33498	0.444

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.71761	0.787
26DAP/20DAP	0.92415	1
34DAP/26DAP	1.08784	1
51DAP/34DAP	1.13977	0.627
52DAP/51DAP	1.04963	0.836
53DAP/52DAP	0.77077	0.148
55DAP/53DAP	1.33343	0.162
57DAP/55DAP	0.92611	0.744
62DAP/57DAP	1.23884	0.723
68DAP/62DAP	1.12283	0.316
68DAP/14DAP	1.12045	0.889

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.17282	0.264

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	0.61733	0.107
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	1.72258
12-2/M82	N/A	N/A
12-4/M82	1.68132
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	1.21661
4-1-1/M82	N/A	N/A
4-1/M82	1.86191
4-3-2/M82	1.6212	0.241
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	1.48878	1

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.06656	0.493
IL2-6/WTpooled	1.00039	1
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	0.95591	0.418
IL12-4/WTpooled	0.8934	0.71
IL1-4/WTpooled	1.09933
WT/WTpooled	0.93149	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	1.08836	0.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	1.93888
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	0.92256	0.538
DC3000 delta B/DC3000 delta AB	0.87652	0.152

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	0.98863	1
Var 0h	0.73079	0.291
Var 12h I row2-row1	0.74995	0.338
Var 12h NI row2-row1	0.97252	0.82
Var 36h I row2-row1	0.84432	1
Var 36h NI row2-row1	1.05525	1
Var 60h I row2-row1	1.03859	1
Var 60h NI row2-row1	1.00934	1
Time course 0hI-0hNI	0.99022	1
Time course 12hI-12hNI	0.96946	0.795
Time course 36hI-36hNI	1.22733	0.025
Time course 60hI-60hNI	0.76117	0.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.4668	0.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A