Expression of 1-1-5.3.10.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 2.72837 | 0.033 |
27DAP/17DAP | 1.05887 | 1 |
39DAP/27DAP | 1.55374 | 0.212 |
41DAP/39DAP | 0.83809 | 0.396 |
42DAP/41DAP | 1.2471 | 0.712 |
43DAP/42DAP | 1.62452 | 0.505 |
47DAP/43DAP | 0.43972 | 0.05 |
52DAP/47DAP | 0.85425 | 0.609 |
57DAP/52DAP | 0.74848 | 0.612 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.55873 | 0.039 |
17DAP/reference | 0.83968 | 0.129 |
27DAP/reference | 0.99322 | 0.763 |
39DAP/reference | 1.03914 | 1 |
41DAP/reference | 1.14547 | 0.421 |
42DAP/reference | 1.87648 | 0.001 |
43DAP/reference | 1.36898 | 0.008 |
47DAP/reference | 1.10552 | 0.433 |
52DAP/reference | 0.6007 | 0.014 |
57DAP/reference | 0.83681 | 0.04 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 3.31288 | 0.036 |
27DAP/17DAP | 0.74711 | 0.121 |
39DAP/27DAP | 1.027 | 0.751 |
41DAP/39DAP | 0.98495 | 0.91 |
42DAP/41DAP | 0.92685 | 0.545 |
43DAP/42DAP | 2.28199 | 0.013 |
47DAP/43DAP | 1.05659 | 0.892 |
52DAP/47DAP | 0.7492 | 0.076 |
57DAP/52DAP | 0.65832 | 0.159 |
57DAP/7DAP | 1.49459 | 0.249 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04197 | 1 |
17DAP/reference | 1.02509 | 0.627 |
27DAP/reference | 1.02924 | 0.664 |
39DAP/reference | 1.95687 | 0.005 |
41DAP/reference | 1.21838 | 0.159 |
42DAP/reference | 1.69343 | 0.009 |
43DAP/reference | 2.69869 | 0.007 |
47DAP/reference | 4.57228 | 0.014 |
52DAP/reference | 2.16429 | 0.007 |
57DAP/reference | 2.27179 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.37954 | 0.005 |
17DAP/reference | 0.92939 | 0.201 |
27DAP/reference | 0.89916 | 0.195 |
39DAP/reference | 1.24842 | 0.061 |
41DAP/reference | 1.0349 | 1 |
42DAP/reference | 1.26025 | 0.009 |
43DAP/reference | 1.10188 | 1 |
47DAP/reference | 1.50439 | 0.011 |
52DAP/reference | 0.90627 | 0.051 |
57DAP/reference | 1.05041 | 0.874 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92705 | 0.391 |
17DAP/reference | 0.98791 | 0.739 |
27DAP/reference | 1.0708 | 0.284 |
39DAP/reference | 1.085 | 0.039 |
41DAP/reference | 1.13935 | 0.074 |
42DAP/reference | 1.66747 | 0.007 |
43DAP/reference | 1.71397 | 0.009 |
47DAP/reference | 1.70318 | 0.008 |
52DAP/reference | 1.58648 | 0.058 |
57DAP/reference | 0.95151 | 0.444 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.33174 | 0.966 |
26DAP/20DAP | 1.70962 | 0.099 |
34DAP/26DAP | 1.05513 | 1 |
51DAP/34DAP | 0.74792 | 0.106 |
52DAP/51DAP | 0.80928 | 0.151 |
53DAP/52DAP | 1.07185 | 0.783 |
55DAP/53DAP | 0.57095 | 0.017 |
57DAP/55DAP | 0.75461 | 0.197 |
62DAP/57DAP | 0.81555 | 0.466 |
68DAP/62DAP | 1.01337 | 0.863 |
68DAP/14DAP | 0.71966 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.42464 | 0.035 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.75799 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.70614 | 0.523 |
Immature Eggplant/Mature Eggplant | 0.73532 | 0.071 |
Ripe Pepper/Ripe Tomato | 2.07833 | 1 |
Mature Eggplant/Ripe Tomato | 2.83662 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.17755 | 0.742 |
1-1-2/M82 | 2.30589 | 1 |
12-2/M82 | 0.78287 | 0.955 |
12-4/M82 | 1.45181 | 1 |
1-3/M82 | 1.95666 | 0.479 |
2-1-1/M82 | 0.60673 | 0.465 |
2-1/M82 | 0.57537 | 0.325 |
2-6/M82 | 1.61405 | 0.352 |
3-2/M82 | 2.08024 | 0.549 |
4-1-1/M82 | 1.25666 | 1 |
4-1/M82 | 2.02371 | 1 |
4-3-2/M82 | 2.61993 | |
4-3/M82 | 1.65401 | 0.268 |
5-3/M82 | 0.84061 | 1 |
6-2/M82 | 4.22341 | 0.253 |
6-3/M82 | 2.60221 | 1 |
7-1/M82 | 1.03829 | |
7-2/M82 | 0.98441 | |
9-3-2/M82 | 1.97766 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.07982 | 0.277 |
IL2-6/WTpooled | 0.88836 | 1 |
IL7-5/WTpooled | 1.00747 | |
IL7-3/WTpooled | 1.15535 | 1 |
IL12-4/WTpooled | 1.02785 | 1 |
IL1-4/WTpooled | 1.07723 | 1 |
WT/WTpooled | 0.97179 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.02245 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.028 | 1 |
DC3000/delta hrp 6h | 1.04104 | 1 |
DC3000/delta hrp 12h | 1.2971 | 1 |
DC3000/delta hrp 24h | 0.61858 | 0.039 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.08233 | 0.476 |
DC3000 delta B/DC3000 delta AB | 1.23158 | 0.196 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.34021 | 1 |
Exp 36h | 1.39838 | 1 |
Exp 60h | 1.51329 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.05738 | 1 |
Var 0h | 1.20971 | 0.936 |
Var 12h I row2-row1 | 0.93424 | 0.705 |
Var 12h NI row2-row1 | 1.00824 | 1 |
Var 36h I row2-row1 | 1.06818 | 1 |
Var 36h NI row2-row1 | 1.01832 | 1 |
Var 60h I row2-row1 | 0.74672 | 0.374 |
Var 60h NI row2-row1 | 0.94418 | 1 |
Time course 0hI-0hNI | 1.10836 | 0.537 |
Time course 12hI-12hNI | 1.01311 | 0.849 |
Time course 36hI-36hNI | 1.12123 | 0.063 |
Time course 60hI-60hNI | 2.05447 | 0.013 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.88485 | 0.391 |
transgenic ySAMdc/azygous control (breaker) | 0.30498 | 0.118 |
transgenic ySAMdc/azygous control (red) | 1.02106 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.43226 | 0.083 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.91159 | 0.431 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.04673 | 0.14 |
Manapal/WT (break) | 0.95626 | 1 |
Manapal/WT (red) | 0.52983 | 0.181 |
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