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Expression of 1-1-5.3.10.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.728370.033
27DAP/17DAP1.058871
39DAP/27DAP1.553740.212
41DAP/39DAP0.838090.396
42DAP/41DAP1.24710.712
43DAP/42DAP1.624520.505
47DAP/43DAP0.439720.05
52DAP/47DAP0.854250.609
57DAP/52DAP0.748480.612

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.558730.039
17DAP/reference0.839680.129
27DAP/reference0.993220.763
39DAP/reference1.039141
41DAP/reference1.145470.421
42DAP/reference1.876480.001
43DAP/reference1.368980.008
47DAP/reference1.105520.433
52DAP/reference0.60070.014
57DAP/reference0.836810.04

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP3.312880.036
27DAP/17DAP0.747110.121
39DAP/27DAP1.0270.751
41DAP/39DAP0.984950.91
42DAP/41DAP0.926850.545
43DAP/42DAP2.281990.013
47DAP/43DAP1.056590.892
52DAP/47DAP0.74920.076
57DAP/52DAP0.658320.159
57DAP/7DAP1.494590.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.041971
17DAP/reference1.025090.627
27DAP/reference1.029240.664
39DAP/reference1.956870.005
41DAP/reference1.218380.159
42DAP/reference1.693430.009
43DAP/reference2.698690.007
47DAP/reference4.572280.014
52DAP/reference2.164290.007
57DAP/reference2.271790.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.379540.005
17DAP/reference0.929390.201
27DAP/reference0.899160.195
39DAP/reference1.248420.061
41DAP/reference1.03491
42DAP/reference1.260250.009
43DAP/reference1.101881
47DAP/reference1.504390.011
52DAP/reference0.906270.051
57DAP/reference1.050410.874

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.927050.391
17DAP/reference0.987910.739
27DAP/reference1.07080.284
39DAP/reference1.0850.039
41DAP/reference1.139350.074
42DAP/reference1.667470.007
43DAP/reference1.713970.009
47DAP/reference1.703180.008
52DAP/reference1.586480.058
57DAP/reference0.951510.444

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.331740.966
26DAP/20DAP1.709620.099
34DAP/26DAP1.055131
51DAP/34DAP0.747920.106
52DAP/51DAP0.809280.151
53DAP/52DAP1.071850.783
55DAP/53DAP0.570950.017
57DAP/55DAP0.754610.197
62DAP/57DAP0.815550.466
68DAP/62DAP1.013370.863
68DAP/14DAP0.719660.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.424640.035

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.757990.058
Mature Green Tomato/Ripe Tomato1.706140.523
Immature Eggplant/Mature Eggplant0.735320.071
Ripe Pepper/Ripe Tomato2.078331
Mature Eggplant/Ripe Tomato2.836620.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.177550.742
1-1-2/M822.305891
12-2/M820.782870.955
12-4/M821.451811
1-3/M821.956660.479
2-1-1/M820.606730.465
2-1/M820.575370.325
2-6/M821.614050.352
3-2/M822.080240.549
4-1-1/M821.256661
4-1/M822.023711
4-3-2/M822.61993N/A
4-3/M821.654010.268
5-3/M820.840611
6-2/M824.223410.253
6-3/M822.602211
7-1/M821.03829N/A
7-2/M820.98441N/A
9-3-2/M821.977661

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.079820.277
IL2-6/WTpooled0.888361
IL7-5/WTpooled1.00747N/A
IL7-3/WTpooled1.155351
IL12-4/WTpooled1.027851
IL1-4/WTpooled1.077231
WT/WTpooled0.971791

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.022451

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.0281
DC3000/delta hrp 6h1.041041
DC3000/delta hrp 12h1.29711
DC3000/delta hrp 24h0.618580.039

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.082330.476
DC3000 delta B/DC3000 delta AB1.231580.196

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.340211
Exp 36h1.398381
Exp 60h1.513290.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.057381
Var 0h1.209710.936
Var 12h I row2-row10.934240.705
Var 12h NI row2-row11.008241
Var 36h I row2-row11.068181
Var 36h NI row2-row11.018321
Var 60h I row2-row10.746720.374
Var 60h NI row2-row10.944181
Time course 0hI-0hNI1.108360.537
Time course 12hI-12hNI1.013110.849
Time course 36hI-36hNI1.121230.063
Time course 60hI-60hNI2.054470.013

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.884850.391
transgenic ySAMdc/azygous control (breaker)0.304980.118
transgenic ySAMdc/azygous control (red)1.021061

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.432260.083

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.911590.431

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.046730.14
Manapal/WT (break)0.956261
Manapal/WT (red)0.529830.181