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Expression of 1-1-5.3.13.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.025830.919
27DAP/17DAP1.137450.877
39DAP/27DAP0.839140.495
41DAP/39DAP1.158660.788
42DAP/41DAP1.086130.999
43DAP/42DAP0.945920.877
47DAP/43DAP1.135250.715
52DAP/47DAP1.301380.441
57DAP/52DAP1.107580.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.959380.352
17DAP/reference1.010871
27DAP/reference1.729060.063
39DAP/reference1.387730.018
41DAP/reference1.27350.047
42DAP/reference1.326590.032
43DAP/reference1.103940.064
47DAP/reference1.365850.032
52DAP/reference2.186610.012
57DAP/reference2.413820.009

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.943040.442
27DAP/17DAP0.929620.614
39DAP/27DAP1.10160.471
41DAP/39DAP1.001651
42DAP/41DAP1.021260.961
43DAP/42DAP0.979890.831
47DAP/43DAP1.03010.88
52DAP/47DAP0.984710.925
57DAP/52DAP1.040250.825
57DAP/7DAP1.279330.207

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.931940.326
17DAP/reference0.910570.22
27DAP/reference0.819650.117
39DAP/reference1.033851
41DAP/reference1.04540.791
42DAP/reference0.990220.612
43DAP/reference1.002510.637
47DAP/reference0.986510.671
52DAP/reference1.000580.74
57DAP/reference0.957720.411

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.891980.176
17DAP/reference1.063780.264
27DAP/reference0.868040.15
39DAP/reference0.890130.159
41DAP/reference0.869140.112
42DAP/reference0.940050.212
43DAP/reference0.971260.552
47DAP/reference0.915840.129
52DAP/reference1.018450.882
57DAP/reference1.134510.229

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.004540.804
17DAP/reference0.948590.537
27DAP/reference0.931350.416
39DAP/reference0.918820.328
41DAP/reference1.219290.205
42DAP/reference0.997260.816
43DAP/reference1.08540.744
47DAP/reference1.250370.179
52DAP/reference1.01330.675
57DAP/reference3.244120.027

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.992321
26DAP/20DAP0.852520.512
34DAP/26DAP1.092150.819
51DAP/34DAP0.924820.428
52DAP/51DAP1.049560.708
53DAP/52DAP1.061410.712
55DAP/53DAP0.936760.686
57DAP/55DAP1.02530.935
62DAP/57DAP1.095730.445
68DAP/62DAP1.127350.737
68DAP/14DAP0.843670.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.008990.855

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.32542N/A
Mature Green Tomato/Ripe Tomato1.097640.752
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.672591
Mature Eggplant/Ripe Tomato1.224031

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.936840.944
1-1-2/M820.841420.958
12-2/M821.263081
12-4/M820.862561
1-3/M820.948491
2-1-1/M821.18046N/A
2-1/M821.195321
2-6/M821.022371
3-2/M820.932390.752
4-1-1/M821.011621
4-1/M821.157430.418
4-3-2/M820.77010.698
4-3/M820.681880.578
5-3/M820.931410.642
6-2/M820.988761
6-3/M820.99541
7-1/M820.843130.803
7-2/M821.062181
9-3-2/M820.888391

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.814960.358
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.11819N/A
IL12-4/WTpooled0.796410.497
IL1-4/WTpooled1.20792N/A
WT/WTpooled0.922581

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.860650.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.007811
DC3000/delta hrp 6h0.78198N/A
DC3000/delta hrp 12h1.395471
DC3000/delta hrp 24h0.943810.682

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.987591
DC3000 delta B/DC3000 delta AB1.062930.491

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h1.588630.221

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.96741N/A
Var 0h1.05830.98
Var 12h I row2-row11.061240.235
Var 12h NI row2-row10.993651
Var 36h I row2-row10.847621
Var 36h NI row2-row10.96910.791
Var 60h I row2-row11.19420.562
Var 60h NI row2-row11.097780.904
Time course 0hI-0hNI1.108130.574
Time course 12hI-12hNI1.031110.81
Time course 36hI-36hNI1.021440.799
Time course 60hI-60hNI1.157110.042

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.873810.314
transgenic ySAMdc/azygous control (breaker)1.036041
transgenic ySAMdc/azygous control (red)1.276710.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.990750.517

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.053691

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.859830.088
Manapal/WT (break)1.551351
Manapal/WT (red)1.424480.222