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Expression of 1-1-5.3.13.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.023390.964
27DAP/17DAP0.968980.994
39DAP/27DAP1.014040.876
41DAP/39DAP1.285280.422
42DAP/41DAP1.223250.841
43DAP/42DAP0.962520.895
47DAP/43DAP0.999910.966
52DAP/47DAP1.036670.949
57DAP/52DAP0.915380.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.934250.132
17DAP/reference1.035510.229
27DAP/reference0.994720.797
39DAP/reference1.049560.286
41DAP/reference1.019940.759
42DAP/reference0.964740.045
43DAP/reference0.983590.745
47DAP/reference1.014250.84
52DAP/reference0.932650.33
57DAP/reference1.101120.024

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.982460.732
27DAP/17DAP1.002451
39DAP/27DAP1.043160.626
41DAP/39DAP1.027620.817
42DAP/41DAP1.085630.663
43DAP/42DAP1.017670.413
47DAP/43DAP1.020210.897
52DAP/47DAP0.940680.645
57DAP/52DAP1.01130.984
57DAP/7DAP0.969131

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.838170.069
17DAP/reference0.978570.518
27DAP/reference0.80660.025
39DAP/reference0.986180.64
41DAP/reference1.070890.524
42DAP/reference0.81470.066
43DAP/reference0.895450.166
47DAP/reference0.85140.101
52DAP/reference0.942890.332
57DAP/reference1.020640.966

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.98290.736
17DAP/reference0.927970.08
27DAP/reference0.907120.079
39DAP/reference0.928230.183
41DAP/reference0.909330.105
42DAP/reference1.005261
43DAP/reference0.94790.459
47DAP/reference1.074140.311
52DAP/reference0.924290.029
57DAP/reference0.978320.549

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.983420.653
17DAP/reference0.98320.681
27DAP/reference0.796550.067
39DAP/reference0.813470.019
41DAP/reference0.896250.077
42DAP/reference0.758570.049
43DAP/reference1.006050.858
47DAP/reference0.957930.296
52DAP/reference0.802950.242
57DAP/reference0.787930.021

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.019230.966
26DAP/20DAP1.072080.674
34DAP/26DAP1.00861
51DAP/34DAP1.00830.978
52DAP/51DAP1.036550.722
53DAP/52DAP0.999690.99
55DAP/53DAP1.036730.834
57DAP/55DAP0.932890.789
62DAP/57DAP0.982671
68DAP/62DAP1.010091
68DAP/14DAP1.179440.125

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.942740.304

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.9346N/A
Mature Green Tomato/Ripe Tomato1.111150.898
Immature Eggplant/Mature Eggplant2.053220.05
Ripe Pepper/Ripe Tomato0.326840.293
Mature Eggplant/Ripe Tomato0.265261

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.890220.651
1-1-2/M821.012911
12-2/M821.026011
12-4/M821.015081
1-3/M820.981421
2-1-1/M820.874490.465
2-1/M821.052341
2-6/M820.955091
3-2/M821.103290.443
4-1-1/M820.966111
4-1/M820.879270.665
4-3-2/M820.934490.698
4-3/M820.951750.72
5-3/M820.960751
6-2/M821.008221
6-3/M820.92431
7-1/M820.994561
7-2/M820.980330.881
9-3-2/M821.034071

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.3078N/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.698350.31
IL12-4/WTpooled0.828970.554
IL1-4/WTpooled0.79163N/A
WT/WTpooled1.08261N/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation2.485330.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.935590.868
DC3000/delta hrp 6h1.43861
DC3000/delta hrp 12h1.018141
DC3000/delta hrp 24h1.133420.553

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.028610.355
DC3000 delta B/DC3000 delta AB1.021370.636

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h2.291760.409
Exp 60h2.058250.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.0161
Var 0h0.689720.457
Var 12h I row2-row11.214970.196
Var 12h NI row2-row11.018231
Var 36h I row2-row11.004061
Var 36h NI row2-row10.857050.478
Var 60h I row2-row11.100771
Var 60h NI row2-row11.14380.904
Time course 0hI-0hNI1.038761
Time course 12hI-12hNI1.037590.803
Time course 36hI-36hNI1.054330.401
Time course 60hI-60hNI1.529960.019

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.885390.485
transgenic ySAMdc/azygous control (breaker)2.928620.166
transgenic ySAMdc/azygous control (red)1.618930.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.945450.067

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.093170.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.138160.307
Manapal/WT (break)1.034041
Manapal/WT (red)0.267240.181