Expression of 1-1-5.3.15.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.85638 | 0.389 |
27DAP/17DAP | 1.09827 | 0.849 |
39DAP/27DAP | 1.12453 | 0.83 |
41DAP/39DAP | 1.47821 | 0.124 |
42DAP/41DAP | 0.97247 | 1 |
43DAP/42DAP | 0.95366 | 0.877 |
47DAP/43DAP | 1.14096 | 0.776 |
52DAP/47DAP | 1.12646 | 0.736 |
57DAP/52DAP | 1.07368 | 0.946 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96042 | 0.344 |
17DAP/reference | 0.96852 | 0.342 |
27DAP/reference | 0.92791 | 0.163 |
39DAP/reference | 0.97738 | 0.624 |
41DAP/reference | 0.9857 | 0.667 |
42DAP/reference | 0.93982 | 0.024 |
43DAP/reference | 0.99518 | 0.882 |
47DAP/reference | 0.96174 | 0.127 |
52DAP/reference | 1.01259 | 1 |
57DAP/reference | 1.02089 | 0.724 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94942 | 0.526 |
27DAP/17DAP | 0.99518 | 0.969 |
39DAP/27DAP | 0.99671 | 1 |
41DAP/39DAP | 1.12512 | 0.774 |
42DAP/41DAP | 0.95743 | 0.649 |
43DAP/42DAP | 0.99221 | 0.96 |
47DAP/43DAP | 1.00088 | 1 |
52DAP/47DAP | 0.99579 | 0.962 |
57DAP/52DAP | 0.95786 | 0.514 |
57DAP/7DAP | 0.98663 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93722 | 0.224 |
17DAP/reference | 0.94871 | 0.108 |
27DAP/reference | 0.94782 | 0.035 |
39DAP/reference | 1.00402 | 0.96 |
41DAP/reference | 1.01393 | 0.836 |
42DAP/reference | 1.01567 | 0.686 |
43DAP/reference | 1.03606 | 0.06 |
47DAP/reference | 0.94474 | 0.293 |
52DAP/reference | 0.96223 | 0.137 |
57DAP/reference | 0.98294 | 0.458 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9952 | 0.907 |
17DAP/reference | 0.94114 | 0.208 |
27DAP/reference | 0.88974 | 0.097 |
39DAP/reference | 0.88057 | 0.036 |
41DAP/reference | 0.91887 | 0.141 |
42DAP/reference | 0.84758 | 0.03 |
43DAP/reference | 0.96347 | 0.478 |
47DAP/reference | 0.9755 | 0.246 |
52DAP/reference | 0.87463 | 0.005 |
57DAP/reference | 0.91489 | 0.156 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97688 | 0.249 |
17DAP/reference | 0.9438 | 0.342 |
27DAP/reference | 0.9523 | 0.051 |
39DAP/reference | 0.93765 | 0.05 |
41DAP/reference | 0.92369 | 0.04 |
42DAP/reference | 0.88227 | 0.134 |
43DAP/reference | 0.89914 | 0.049 |
47DAP/reference | 0.8994 | 0.02 |
52DAP/reference | 0.95141 | 0.36 |
57DAP/reference | 0.82724 | 0.019 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.03658 | 0.966 |
26DAP/20DAP | 0.96616 | 1 |
34DAP/26DAP | 0.99582 | 1 |
51DAP/34DAP | 1.06683 | 0.706 |
52DAP/51DAP | 1.00562 | 0.965 |
53DAP/52DAP | 1.02631 | 0.935 |
55DAP/53DAP | 0.96972 | 0.784 |
57DAP/55DAP | 0.93357 | 0.677 |
62DAP/57DAP | 0.95521 | 0.871 |
68DAP/62DAP | 1.15566 | 0.31 |
68DAP/14DAP | 0.82897 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.89142 | 0.087 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.81434 | 0.323 |
Mature Green Tomato/Ripe Tomato | 1.00498 | 0.835 |
Immature Eggplant/Mature Eggplant | 3.36096 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.61552 | 1 |
Mature Eggplant/Ripe Tomato | 2.69179 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.05756 | 1 |
1-1-2/M82 | 0.94918 | 1 |
12-2/M82 | 0.91545 | 0.862 |
12-4/M82 | 1.00092 | 1 |
1-3/M82 | 0.93156 | 0.501 |
2-1-1/M82 | 1.10281 | 1 |
2-1/M82 | 1.00521 | 1 |
2-6/M82 | 0.90158 | 1 |
3-2/M82 | 0.98092 | |
4-1-1/M82 | 1.08144 | 1 |
4-1/M82 | 1.28945 | 0.512 |
4-3-2/M82 | 0.93408 | |
4-3/M82 | 0.95714 | 0.72 |
5-3/M82 | 0.99931 | 1 |
6-2/M82 | 1.02805 | 1 |
6-3/M82 | 1.03464 | 1 |
7-1/M82 | 1.01065 | 1 |
7-2/M82 | 0.98078 | 1 |
9-3-2/M82 | 0.86217 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.88956 | 0.395 |
IL7-5/WTpooled | 1.15034 | |
IL7-3/WTpooled | 0.54871 | 0.293 |
IL12-4/WTpooled | 1.06902 | 0.737 |
IL1-4/WTpooled | 0.96427 | |
WT/WTpooled | 0.98254 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.14797 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03348 | 0.894 |
DC3000/delta hrp 6h | 1.21421 | 0.582 |
DC3000/delta hrp 12h | 0.90771 | 1 |
DC3000/delta hrp 24h | 1.75268 | 0.079 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.95945 | |
DC3000 delta B/DC3000 delta AB | 0.8785 | 0.393 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.95447 | 1 |
Exp 36h | 0.94649 | 0.879 |
Exp 60h | 1.15645 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9439 | 1 |
Var 0h | 0.3906 | 1 |
Var 12h I row2-row1 | 1.18906 | 0.216 |
Var 12h NI row2-row1 | 1.00438 | 1 |
Var 36h I row2-row1 | 1.01835 | 1 |
Var 36h NI row2-row1 | 1.05101 | 0.482 |
Var 60h I row2-row1 | 1.07715 | 0.562 |
Var 60h NI row2-row1 | 1.0327 | 1 |
Time course 0hI-0hNI | 1.01919 | 1 |
Time course 12hI-12hNI | 1.01952 | 0.818 |
Time course 36hI-36hNI | 0.87866 | 0.144 |
Time course 60hI-60hNI | 1.3133 | 0.015 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.94029 | 0.485 |
transgenic ySAMdc/azygous control (breaker) | 1.02088 | 1 |
transgenic ySAMdc/azygous control (red) | 1.01552 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97847 | 0.27 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.24987 | 0.233 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.10271 | 0.307 |
Manapal/WT (break) | 0.88307 | 1 |
Manapal/WT (red) | 0.95257 | 0.607 |
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