Expression of 1-1-5.3.15.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.856380.389
27DAP/17DAP1.098270.849
39DAP/27DAP1.124530.83
41DAP/39DAP1.478210.124
42DAP/41DAP0.972471
43DAP/42DAP0.953660.877
47DAP/43DAP1.140960.776
52DAP/47DAP1.126460.736
57DAP/52DAP1.073680.946

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.960420.344
17DAP/reference0.968520.342
27DAP/reference0.927910.163
39DAP/reference0.977380.624
41DAP/reference0.98570.667
42DAP/reference0.939820.024
43DAP/reference0.995180.882
47DAP/reference0.961740.127
52DAP/reference1.012591
57DAP/reference1.020890.724

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.949420.526
27DAP/17DAP0.995180.969
39DAP/27DAP0.996711
41DAP/39DAP1.125120.774
42DAP/41DAP0.957430.649
43DAP/42DAP0.992210.96
47DAP/43DAP1.000881
52DAP/47DAP0.995790.962
57DAP/52DAP0.957860.514
57DAP/7DAP0.986631

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.937220.224
17DAP/reference0.948710.108
27DAP/reference0.947820.035
39DAP/reference1.004020.96
41DAP/reference1.013930.836
42DAP/reference1.015670.686
43DAP/reference1.036060.06
47DAP/reference0.944740.293
52DAP/reference0.962230.137
57DAP/reference0.982940.458

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.99520.907
17DAP/reference0.941140.208
27DAP/reference0.889740.097
39DAP/reference0.880570.036
41DAP/reference0.918870.141
42DAP/reference0.847580.03
43DAP/reference0.963470.478
47DAP/reference0.97550.246
52DAP/reference0.874630.005
57DAP/reference0.914890.156

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.976880.249
17DAP/reference0.94380.342
27DAP/reference0.95230.051
39DAP/reference0.937650.05
41DAP/reference0.923690.04
42DAP/reference0.882270.134
43DAP/reference0.899140.049
47DAP/reference0.89940.02
52DAP/reference0.951410.36
57DAP/reference0.827240.019

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.036580.966
26DAP/20DAP0.966161
34DAP/26DAP0.995821
51DAP/34DAP1.066830.706
52DAP/51DAP1.005620.965
53DAP/52DAP1.026310.935
55DAP/53DAP0.969720.784
57DAP/55DAP0.933570.677
62DAP/57DAP0.955210.871
68DAP/62DAP1.155660.31
68DAP/14DAP0.828970.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.891420.087

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.814340.323
Mature Green Tomato/Ripe Tomato1.004980.835
Immature Eggplant/Mature Eggplant3.360960.05
Ripe Pepper/Ripe Tomato1.615521
Mature Eggplant/Ripe Tomato2.691790.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.057561
1-1-2/M820.949181
12-2/M820.915450.862
12-4/M821.000921
1-3/M820.931560.501
2-1-1/M821.102811
2-1/M821.005211
2-6/M820.901581
3-2/M820.98092
4-1-1/M821.081441
4-1/M821.289450.512
4-3-2/M820.93408
4-3/M820.957140.72
5-3/M820.999311
6-2/M821.028051
6-3/M821.034641
7-1/M821.010651
7-2/M820.980781
9-3-2/M820.862170.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.889560.395
IL7-5/WTpooled1.15034
IL7-3/WTpooled0.548710.293
IL12-4/WTpooled1.069020.737
IL1-4/WTpooled0.96427
WT/WTpooled0.982541

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.147971

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.033480.894
DC3000/delta hrp 6h1.214210.582
DC3000/delta hrp 12h0.907711
DC3000/delta hrp 24h1.752680.079

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.95945
DC3000 delta B/DC3000 delta AB0.87850.393

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.954471
Exp 36h0.946490.879
Exp 60h1.156450.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.94391
Var 0h0.39061
Var 12h I row2-row11.189060.216
Var 12h NI row2-row11.004381
Var 36h I row2-row11.018351
Var 36h NI row2-row11.051010.482
Var 60h I row2-row11.077150.562
Var 60h NI row2-row11.03271
Time course 0hI-0hNI1.019191
Time course 12hI-12hNI1.019520.818
Time course 36hI-36hNI0.878660.144
Time course 60hI-60hNI1.31330.015

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.940290.485
transgenic ySAMdc/azygous control (breaker)1.020881
transgenic ySAMdc/azygous control (red)1.015520.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.978470.27

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.249870.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.102710.307
Manapal/WT (break)0.883071
Manapal/WT (red)0.952570.607