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Expression of 1-1-5.3.2.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.045031
27DAP/17DAP0.825630.542
39DAP/27DAP1.484140.173
41DAP/39DAP0.628070.067
42DAP/41DAP0.849441
43DAP/42DAP1.12771
47DAP/43DAP0.753880.276
52DAP/47DAP1.07740.964
57DAP/52DAP2.129810.826

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.145470.089
17DAP/reference1.049460.585
27DAP/reference1.019440.831
39DAP/reference0.995340.885
41DAP/reference0.933930.154
42DAP/reference1.150250.004
43DAP/reference1.096970.028
47DAP/reference1.145590.001
52DAP/reference1.034271
57DAP/reference1.114890.016

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.129560.348
27DAP/17DAP1.05810.826
39DAP/27DAP0.886720.191
41DAP/39DAP1.231370.727
42DAP/41DAP1.270260.539
43DAP/42DAP0.838610.03
47DAP/43DAP0.978590.877
52DAP/47DAP0.921780.553
57DAP/52DAP1.049860.732
57DAP/7DAP1.096971

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.89150.028
17DAP/reference1.917220.006
27DAP/reference1.927130.007
39DAP/reference1.432570.007
41DAP/reference1.317480.031
42DAP/reference1.416210.046
43DAP/reference1.351740.037
47DAP/reference1.268230.031
52DAP/reference2.079310.007
57DAP/reference1.707930.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.123380.767
17DAP/reference1.441260.019
27DAP/reference1.603230.065
39DAP/reference1.430.04
41DAP/reference1.347860.006
42DAP/reference1.43840.031
43DAP/reference0.966650.43
47DAP/reference1.246360.071
52DAP/reference0.978070.433
57DAP/reference0.923590.278

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.716310.031
17DAP/reference1.172290.522
27DAP/reference1.381950.023
39DAP/reference1.557690.008
41DAP/reference1.388230.008
42DAP/reference1.261670.146
43DAP/reference1.448970.022
47DAP/reference0.969650.478
52DAP/reference1.377860.119
57DAP/reference1.859570.01

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.215390.966
26DAP/20DAP1.371570.366
34DAP/26DAP0.797790.343
51DAP/34DAP0.58220.053
52DAP/51DAP0.803211
53DAP/52DAP0.950340.776
55DAP/53DAP0.607960.026
57DAP/55DAP1.762380.61
62DAP/57DAP1.165630.723
68DAP/62DAP1.009720.939
68DAP/14DAP1.585550.08

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.883010.015

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.982280.826
Mature Green Tomato/Ripe Tomato1.160890.898
Immature Eggplant/Mature Eggplant0.872090.125
Ripe Pepper/Ripe Tomato1.03941
Mature Eggplant/Ripe Tomato1.265880.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.732140.605
1-1-2/M821.193821
12-2/M820.851710.955
12-4/M821.105311
1-3/M822.05380.277
2-1-1/M820.956560.465
2-1/M820.539340.322
2-6/M820.844231
3-2/M820.908040.752
4-1-1/M821.221751
4-1/M821.319851
4-3-2/M821.261831
4-3/M821.425580.268
5-3/M82N/AN/A
6-2/M821.1641
6-3/M821.093761
7-1/M821.04117N/A
7-2/M821.09917N/A
9-3-2/M821.233411

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.081960.456
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.737230.294
IL12-4/WTpooled1.07350.891
IL1-4/WTpooled1.0163N/A
WT/WTpooled0.997771

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.033711

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.127690.692
DC3000/delta hrp 6h0.938110.95
DC3000/delta hrp 12h0.866811
DC3000/delta hrp 24h1.175720.308

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.08516N/A
DC3000 delta B/DC3000 delta AB1.096150.468

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.90531
Exp 36h1.328441
Exp 60h1.327720.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.977621
Var 0h0.653840.325
Var 12h I row2-row10.976180.948
Var 12h NI row2-row11.218790.649
Var 36h I row2-row11.092481
Var 36h NI row2-row10.693110.378
Var 60h I row2-row10.880480.832
Var 60h NI row2-row10.813650.359
Time course 0hI-0hNI0.872960.153
Time course 12hI-12hNI1.054970.572
Time course 36hI-36hNI1.439940.039
Time course 60hI-60hNI1.423870.015

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.928970.289
transgenic ySAMdc/azygous control (breaker)1.584820.178
transgenic ySAMdc/azygous control (red)1.131680.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.272650.046

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.821010.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.759980.172
Manapal/WT (break)0.99541
Manapal/WT (red)1.426580.142