Tomato Functional Genomics Database (TFGD)

TFGD

Home

Expression

Metabolite

sRNA

Links

Contact

Expression of 1-1-5.3.2.13

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.1938	0.485
27DAP/17DAP	0.79931	0.551
39DAP/27DAP	0.79306	0.482
41DAP/39DAP	0.78256	0.26
42DAP/41DAP	1.178	0.868
43DAP/42DAP	1.3958	0.296
47DAP/43DAP	1.23083	0.776
52DAP/47DAP	0.8986	0.683
57DAP/52DAP	1.14745	0.96

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.87803	0.052
17DAP/reference	0.96407	0.393
27DAP/reference	0.97186	0.484
39DAP/reference	0.9356	0.284
41DAP/reference	0.94157	0.267
42DAP/reference	0.83048	0.003
43DAP/reference	1.06156	0.382
47DAP/reference	0.92775	0.055
52DAP/reference	0.97719	0.475
57DAP/reference	1.02604	0.876

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.10067	0.619
27DAP/17DAP	1.03803	0.942
39DAP/27DAP	1.0069	1
41DAP/39DAP	0.87493	0.547
42DAP/41DAP	0.75209	0.238
43DAP/42DAP	0.95983	0.684
47DAP/43DAP	1.14492	0.805
52DAP/47DAP	1.25572	0.484
57DAP/52DAP	1.11416	0.957
57DAP/7DAP	1.32408	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.98321	0.613
17DAP/reference	1.19313	0.244
27DAP/reference	1.31227	0.107
39DAP/reference	1.21421	0.133
41DAP/reference	1.07326	0.812
42DAP/reference	0.88565	0.338
43DAP/reference	1.26405	0.083
47DAP/reference	0.85385	0.168
52DAP/reference	1.20664	0.121
57DAP/reference	1.38332	0.007

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.90575	0.176
17DAP/reference	0.90297	0.153
27DAP/reference	0.82288	0.06
39DAP/reference	0.9452	0.214
41DAP/reference	0.83116	0.028
42DAP/reference	0.77739	0.025
43DAP/reference	0.85919	0.114
47DAP/reference	0.74615	0.007
52DAP/reference	0.93838	0.111
57DAP/reference	0.89851	0.079

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.09889	0.303
17DAP/reference	1.09643	0.924
27DAP/reference	1.46084	0.078
39DAP/reference	1.10265	0.169
41DAP/reference	1.16054	0.286
42DAP/reference	1.43675	0.099
43DAP/reference	1.06363	0.71
47DAP/reference	0.94202	0.286
52DAP/reference	1.20112	0.306
57DAP/reference	0.96232	0.461

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.94168	1
26DAP/20DAP	1.05655	N/A
34DAP/26DAP	0.93744	0.927
51DAP/34DAP	1.60542	0.1
52DAP/51DAP	0.85639	1
53DAP/52DAP	1.14446	0.738
55DAP/53DAP	1.3565	0.614
57DAP/55DAP	0.8592	0.49
62DAP/57DAP	0.97113	0.28
68DAP/62DAP	1.29463	0.093
68DAP/14DAP	1.18716	0.615

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.77799	0.05

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	0.87099	0.364
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	1.74561	0.05
Ripe Pepper/Ripe Tomato	3.59463	0.258
Mature Eggplant/Ripe Tomato	1.49828	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	1.00514	1
1-3/M82	N/A	N/A
2-1-1/M82	1.08728	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	0.98561	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	0.92471	N/A
5-3/M82	0.89919	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.80077	0.277
IL2-6/WTpooled	0.83936	0.473
IL7-5/WTpooled	1.46259	0.792
IL7-3/WTpooled	1.35957	1
IL12-4/WTpooled	1.43735	0.516
IL1-4/WTpooled	1.2118	1
WT/WTpooled	0.96418	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	0.97171	1

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.21717	0.894
DC3000/delta hrp 6h	1.00045	0.95
DC3000/delta hrp 12h	0.99651	1
DC3000/delta hrp 24h	1.6338	0.041

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	1.16829	1
Exp 36h	1.58073	0.693
Exp 60h	1.39417	0.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	0.97636	1
Var 0h	1.38322	0.936
Var 12h I row2-row1	0.93183	0.705
Var 12h NI row2-row1	1.00642	N/A
Var 36h I row2-row1	1.01585	0.601
Var 36h NI row2-row1	0.90889	0.645
Var 60h I row2-row1	1.02376	1
Var 60h NI row2-row1	1.00083	0.904
Time course 0hI-0hNI	0.95211	0.618
Time course 12hI-12hNI	0.99823	1
Time course 36hI-36hNI	0.91514	0.047
Time course 60hI-60hNI	0.77974	0.007

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	0.95181	0.485
transgenic ySAMdc/azygous control (breaker)	1.1666	0.178
transgenic ySAMdc/azygous control (red)	0.95492	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.04249	0.047

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.40176	0.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	1.35598	0.105
Manapal/WT (break)	1.39691	0.183
Manapal/WT (red)	1.40878	0.142