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Expression of 1-1-5.4.10.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.043680.961
27DAP/17DAP1.076970.874
39DAP/27DAP1.073160.922
41DAP/39DAP1.54240.522
42DAP/41DAP1.6460.507
43DAP/42DAP0.953390.877
47DAP/43DAP1.044691
52DAP/47DAP1.197670.624
57DAP/52DAP0.736540.867

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.875090.036
17DAP/reference1.026070.631
27DAP/reference1.030140.587
39DAP/reference1.034540.557
41DAP/reference0.878590.049
42DAP/reference0.915930.103
43DAP/reference0.999310.882
47DAP/reference1.001340.636
52DAP/reference1.006010.749
57DAP/reference1.088270.118

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.117461
27DAP/17DAP0.986110.943
39DAP/27DAP1.227940.41
41DAP/39DAP0.937040.849
42DAP/41DAP0.915170.434
43DAP/42DAP1.07870.554
47DAP/43DAP1.081410.805
52DAP/47DAP0.876610.284
57DAP/52DAP0.988960.813
57DAP/7DAP1.17671

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.023591
17DAP/reference1.14870.574
27DAP/reference1.143160.301
39DAP/reference0.941640.354
41DAP/reference1.018090.709
42DAP/reference0.783990.07
43DAP/reference1.101160.637
47DAP/reference1.272640.059
52DAP/reference0.934290.254
57DAP/reference0.911890.215

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.145280.343
17DAP/reference0.981680.642
27DAP/reference1.053150.822
39DAP/reference1.114720.22
41DAP/reference0.93640.218
42DAP/reference1.077340.466
43DAP/reference1.247110.04
47DAP/reference1.110780.074
52DAP/reference0.998810.666
57DAP/reference1.139260.146

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.924870.29
17DAP/reference1.001020.792
27DAP/reference1.208910.081
39DAP/reference1.075860.596
41DAP/reference1.06230.537
42DAP/reference0.984010.671
43DAP/reference0.898090.188
47DAP/reference0.884490.076
52DAP/reference0.843940.066
57DAP/reference1.091370.41

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.887041
26DAP/20DAP1.143080.594
34DAP/26DAP1.120070.819
51DAP/34DAP1.273840.1
52DAP/51DAP1.30.579
53DAP/52DAP1.120120.961
55DAP/53DAP0.959610.746
57DAP/55DAP1.168710.474
62DAP/57DAP0.935770.871
68DAP/62DAP1.02631
68DAP/14DAP1.3690.366

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.137640.527

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.46430.143
Mature Green Tomato/Ripe Tomato0.648020.182
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato4.7447N/A
Mature Eggplant/Ripe Tomato1.95734N/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.78628N/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.33911N/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M821.17821N/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.03612N/A
IL2-6/WTpooled0.848820.358
IL7-5/WTpooled1.031951
IL7-3/WTpooled1.061251
IL12-4/WTpooled0.785330.71
IL1-4/WTpooled1.039991
WT/WTpooled1.014461

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.458080.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.030380.921
DC3000/delta hrp 6h1.006351
DC3000/delta hrp 12h0.999721
DC3000/delta hrp 24h0.805950.174

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.90176N/A
DC3000 delta B/DC3000 delta AB0.941240.936

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.936181
Exp 36h1.016421
Exp 60h0.755320.278

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.022381
Var 0h1.018211
Var 12h I row2-row10.938270.565
Var 12h NI row2-row11.080721
Var 36h I row2-row11.018511
Var 36h NI row2-row10.823520.421
Var 60h I row2-row10.865810.285
Var 60h NI row2-row10.674860.932
Time course 0hI-0hNI0.914780.359
Time course 12hI-12hNI1.060430.233
Time course 36hI-36hNI1.272520.007
Time course 60hI-60hNI1.432720.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.019370.921
transgenic ySAMdc/azygous control (breaker)1.179940.248
transgenic ySAMdc/azygous control (red)1.174060.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.000821

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.896930.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.42360.093
Manapal/WT (break)1.447470.381
Manapal/WT (red)1.350370.164