Expression of 1-1-5.4.10.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04368 | 0.961 |
27DAP/17DAP | 1.07697 | 0.874 |
39DAP/27DAP | 1.07316 | 0.922 |
41DAP/39DAP | 1.5424 | 0.522 |
42DAP/41DAP | 1.646 | 0.507 |
43DAP/42DAP | 0.95339 | 0.877 |
47DAP/43DAP | 1.04469 | 1 |
52DAP/47DAP | 1.19767 | 0.624 |
57DAP/52DAP | 0.73654 | 0.867 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87509 | 0.036 |
17DAP/reference | 1.02607 | 0.631 |
27DAP/reference | 1.03014 | 0.587 |
39DAP/reference | 1.03454 | 0.557 |
41DAP/reference | 0.87859 | 0.049 |
42DAP/reference | 0.91593 | 0.103 |
43DAP/reference | 0.99931 | 0.882 |
47DAP/reference | 1.00134 | 0.636 |
52DAP/reference | 1.00601 | 0.749 |
57DAP/reference | 1.08827 | 0.118 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.11746 | 1 |
27DAP/17DAP | 0.98611 | 0.943 |
39DAP/27DAP | 1.22794 | 0.41 |
41DAP/39DAP | 0.93704 | 0.849 |
42DAP/41DAP | 0.91517 | 0.434 |
43DAP/42DAP | 1.0787 | 0.554 |
47DAP/43DAP | 1.08141 | 0.805 |
52DAP/47DAP | 0.87661 | 0.284 |
57DAP/52DAP | 0.98896 | 0.813 |
57DAP/7DAP | 1.1767 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02359 | 1 |
17DAP/reference | 1.1487 | 0.574 |
27DAP/reference | 1.14316 | 0.301 |
39DAP/reference | 0.94164 | 0.354 |
41DAP/reference | 1.01809 | 0.709 |
42DAP/reference | 0.78399 | 0.07 |
43DAP/reference | 1.10116 | 0.637 |
47DAP/reference | 1.27264 | 0.059 |
52DAP/reference | 0.93429 | 0.254 |
57DAP/reference | 0.91189 | 0.215 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14528 | 0.343 |
17DAP/reference | 0.98168 | 0.642 |
27DAP/reference | 1.05315 | 0.822 |
39DAP/reference | 1.11472 | 0.22 |
41DAP/reference | 0.9364 | 0.218 |
42DAP/reference | 1.07734 | 0.466 |
43DAP/reference | 1.24711 | 0.04 |
47DAP/reference | 1.11078 | 0.074 |
52DAP/reference | 0.99881 | 0.666 |
57DAP/reference | 1.13926 | 0.146 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92487 | 0.29 |
17DAP/reference | 1.00102 | 0.792 |
27DAP/reference | 1.20891 | 0.081 |
39DAP/reference | 1.07586 | 0.596 |
41DAP/reference | 1.0623 | 0.537 |
42DAP/reference | 0.98401 | 0.671 |
43DAP/reference | 0.89809 | 0.188 |
47DAP/reference | 0.88449 | 0.076 |
52DAP/reference | 0.84394 | 0.066 |
57DAP/reference | 1.09137 | 0.41 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.88704 | 1 |
26DAP/20DAP | 1.14308 | 0.594 |
34DAP/26DAP | 1.12007 | 0.819 |
51DAP/34DAP | 1.27384 | 0.1 |
52DAP/51DAP | 1.3 | 0.579 |
53DAP/52DAP | 1.12012 | 0.961 |
55DAP/53DAP | 0.95961 | 0.746 |
57DAP/55DAP | 1.16871 | 0.474 |
62DAP/57DAP | 0.93577 | 0.871 |
68DAP/62DAP | 1.0263 | 1 |
68DAP/14DAP | 1.369 | 0.366 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.13764 | 0.527 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.4643 | 0.143 |
Mature Green Tomato/Ripe Tomato | 0.64802 | 0.182 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 4.7447 | |
Mature Eggplant/Ripe Tomato | 1.95734 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.78628 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.33911 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.17821 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.03612 | |
IL2-6/WTpooled | 0.84882 | 0.358 |
IL7-5/WTpooled | 1.03195 | 1 |
IL7-3/WTpooled | 1.06125 | 1 |
IL12-4/WTpooled | 0.78533 | 0.71 |
IL1-4/WTpooled | 1.03999 | 1 |
WT/WTpooled | 1.01446 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.45808 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03038 | 0.921 |
DC3000/delta hrp 6h | 1.00635 | 1 |
DC3000/delta hrp 12h | 0.99972 | 1 |
DC3000/delta hrp 24h | 0.80595 | 0.174 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.90176 | |
DC3000 delta B/DC3000 delta AB | 0.94124 | 0.936 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.93618 | 1 |
Exp 36h | 1.01642 | 1 |
Exp 60h | 0.75532 | 0.278 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02238 | 1 |
Var 0h | 1.01821 | 1 |
Var 12h I row2-row1 | 0.93827 | 0.565 |
Var 12h NI row2-row1 | 1.08072 | 1 |
Var 36h I row2-row1 | 1.01851 | 1 |
Var 36h NI row2-row1 | 0.82352 | 0.421 |
Var 60h I row2-row1 | 0.86581 | 0.285 |
Var 60h NI row2-row1 | 0.67486 | 0.932 |
Time course 0hI-0hNI | 0.91478 | 0.359 |
Time course 12hI-12hNI | 1.06043 | 0.233 |
Time course 36hI-36hNI | 1.27252 | 0.007 |
Time course 60hI-60hNI | 1.43272 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.01937 | 0.921 |
transgenic ySAMdc/azygous control (breaker) | 1.17994 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.17406 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00082 | 1 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.89693 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.4236 | 0.093 |
Manapal/WT (break) | 1.44747 | 0.381 |
Manapal/WT (red) | 1.35037 | 0.164 |
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