Expression of 1-1-5.4.11.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.941290.664
27DAP/17DAP1.134790.902
39DAP/27DAP0.878110.549
41DAP/39DAP1.540230.25
42DAP/41DAP1.087620.983
43DAP/42DAP0.888710.705
47DAP/43DAP0.839150.51
52DAP/47DAP1.480250.278
57DAP/52DAP1.043551

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.981260.513
17DAP/reference0.995590.904
27DAP/reference0.992330.725
39DAP/reference0.913380.247
41DAP/reference0.925390.341
42DAP/reference0.943260.022
43DAP/reference1.021050.547
47DAP/reference0.901650.006
52DAP/reference0.999680.749
57DAP/reference0.941490.026

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.941750.526
27DAP/17DAP1.030630.957
39DAP/27DAP1.057550.615
41DAP/39DAP0.994421
42DAP/41DAP1.081590.622
43DAP/42DAP0.981530.801
47DAP/43DAP1.007550.973
52DAP/47DAP0.989580.962
57DAP/52DAP1.035360.777
57DAP/7DAP1.133310.207

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.910280.058
17DAP/reference0.925280.064
27DAP/reference0.902110.01
39DAP/reference0.938880.016
41DAP/reference0.945850.056
42DAP/reference0.99660.791
43DAP/reference0.928740.059
47DAP/reference0.933880.101
52DAP/reference0.881630.083
57DAP/reference0.878210.022

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.002481
17DAP/reference0.976340.422
27DAP/reference0.899330.119
39DAP/reference0.92460.113
41DAP/reference0.873380.061
42DAP/reference0.892990.027
43DAP/reference1.001860.875
47DAP/reference0.935790.051
52DAP/reference0.92180.017
57DAP/reference1.062510.462

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.908530.039
17DAP/reference0.967710.417
27DAP/reference0.914240.032
39DAP/reference0.914390.024
41DAP/reference0.92070.046
42DAP/reference0.866410.049
43DAP/reference0.872360.073
47DAP/reference0.941190.191
52DAP/reference0.924980.289
57DAP/reference0.746180.023

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.962581
26DAP/20DAP0.974581
34DAP/26DAP0.970980.879
51DAP/34DAP0.932990.466
52DAP/51DAP1.036640.689
53DAP/52DAP1.10894
55DAP/53DAP0.952160.807
57DAP/55DAP0.916180.633
62DAP/57DAP1.013220.767
68DAP/62DAP0.908640.429
68DAP/14DAP1.062390.436

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.020091

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.84520.317
Immature Eggplant/Mature Eggplant1.270780.123
Ripe Pepper/Ripe Tomato1.068321
Mature Eggplant/Ripe Tomato0.535110.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.005831
1-1-2/M820.922380.958
12-2/M820.964380.955
12-4/M821.052171
1-3/M821.058681
2-1-1/M821.130071
2-1/M82N/AN/A
2-6/M820.965141
3-2/M821.042981
4-1-1/M820.974651
4-1/M820.857170.737
4-3-2/M820.957591
4-3/M820.963391
5-3/M820.953961
6-2/M821.006621
6-3/M821.018811
7-1/M820.9770.466
7-2/M821.086891
9-3-2/M820.831090.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.60355
IL2-6/WTpooled1.242250.456
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.998541
IL12-4/WTpooled1.152320.546
IL1-4/WTpooled1.004251
WT/WTpooled0.97641

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.210980.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.030060.921
DC3000/delta hrp 6h0.868410.95
DC3000/delta hrp 12h1.121731
DC3000/delta hrp 24h1.007471

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.048860.355
DC3000 delta B/DC3000 delta AB1.081250.381

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.753370.328
Exp 36hN/AN/A
Exp 60h1.605550.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.016941
Var 0h0.877980.98
Var 12h I row2-row11.202790.224
Var 12h NI row2-row11.066611
Var 36h I row2-row11.011421
Var 36h NI row2-row10.929090.645
Var 60h I row2-row10.918040.374
Var 60h NI row2-row11.050561
Time course 0hI-0hNI1.083840.799
Time course 12hI-12hNI1.052570.747
Time course 36hI-36hNI1.067950.128
Time course 60hI-60hNI1.59370.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.94620.33
transgenic ySAMdc/azygous control (breaker)1.640910.178
transgenic ySAMdc/azygous control (red)1.078550.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.007070.619

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.129710.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.021281
Manapal/WT (break)0.884231
Manapal/WT (red)1.86890.164