Expression of 1-1-5.4.11.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94129 | 0.664 |
27DAP/17DAP | 1.13479 | 0.902 |
39DAP/27DAP | 0.87811 | 0.549 |
41DAP/39DAP | 1.54023 | 0.25 |
42DAP/41DAP | 1.08762 | 0.983 |
43DAP/42DAP | 0.88871 | 0.705 |
47DAP/43DAP | 0.83915 | 0.51 |
52DAP/47DAP | 1.48025 | 0.278 |
57DAP/52DAP | 1.04355 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98126 | 0.513 |
17DAP/reference | 0.99559 | 0.904 |
27DAP/reference | 0.99233 | 0.725 |
39DAP/reference | 0.91338 | 0.247 |
41DAP/reference | 0.92539 | 0.341 |
42DAP/reference | 0.94326 | 0.022 |
43DAP/reference | 1.02105 | 0.547 |
47DAP/reference | 0.90165 | 0.006 |
52DAP/reference | 0.99968 | 0.749 |
57DAP/reference | 0.94149 | 0.026 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94175 | 0.526 |
27DAP/17DAP | 1.03063 | 0.957 |
39DAP/27DAP | 1.05755 | 0.615 |
41DAP/39DAP | 0.99442 | 1 |
42DAP/41DAP | 1.08159 | 0.622 |
43DAP/42DAP | 0.98153 | 0.801 |
47DAP/43DAP | 1.00755 | 0.973 |
52DAP/47DAP | 0.98958 | 0.962 |
57DAP/52DAP | 1.03536 | 0.777 |
57DAP/7DAP | 1.13331 | 0.207 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91028 | 0.058 |
17DAP/reference | 0.92528 | 0.064 |
27DAP/reference | 0.90211 | 0.01 |
39DAP/reference | 0.93888 | 0.016 |
41DAP/reference | 0.94585 | 0.056 |
42DAP/reference | 0.9966 | 0.791 |
43DAP/reference | 0.92874 | 0.059 |
47DAP/reference | 0.93388 | 0.101 |
52DAP/reference | 0.88163 | 0.083 |
57DAP/reference | 0.87821 | 0.022 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00248 | 1 |
17DAP/reference | 0.97634 | 0.422 |
27DAP/reference | 0.89933 | 0.119 |
39DAP/reference | 0.9246 | 0.113 |
41DAP/reference | 0.87338 | 0.061 |
42DAP/reference | 0.89299 | 0.027 |
43DAP/reference | 1.00186 | 0.875 |
47DAP/reference | 0.93579 | 0.051 |
52DAP/reference | 0.9218 | 0.017 |
57DAP/reference | 1.06251 | 0.462 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90853 | 0.039 |
17DAP/reference | 0.96771 | 0.417 |
27DAP/reference | 0.91424 | 0.032 |
39DAP/reference | 0.91439 | 0.024 |
41DAP/reference | 0.9207 | 0.046 |
42DAP/reference | 0.86641 | 0.049 |
43DAP/reference | 0.87236 | 0.073 |
47DAP/reference | 0.94119 | 0.191 |
52DAP/reference | 0.92498 | 0.289 |
57DAP/reference | 0.74618 | 0.023 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.96258 | 1 |
26DAP/20DAP | 0.97458 | 1 |
34DAP/26DAP | 0.97098 | 0.879 |
51DAP/34DAP | 0.93299 | 0.466 |
52DAP/51DAP | 1.03664 | 0.689 |
53DAP/52DAP | 1.10894 | |
55DAP/53DAP | 0.95216 | 0.807 |
57DAP/55DAP | 0.91618 | 0.633 |
62DAP/57DAP | 1.01322 | 0.767 |
68DAP/62DAP | 0.90864 | 0.429 |
68DAP/14DAP | 1.06239 | 0.436 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.02009 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.8452 | 0.317 |
Immature Eggplant/Mature Eggplant | 1.27078 | 0.123 |
Ripe Pepper/Ripe Tomato | 1.06832 | 1 |
Mature Eggplant/Ripe Tomato | 0.53511 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.00583 | 1 |
1-1-2/M82 | 0.92238 | 0.958 |
12-2/M82 | 0.96438 | 0.955 |
12-4/M82 | 1.05217 | 1 |
1-3/M82 | 1.05868 | 1 |
2-1-1/M82 | 1.13007 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.96514 | 1 |
3-2/M82 | 1.04298 | 1 |
4-1-1/M82 | 0.97465 | 1 |
4-1/M82 | 0.85717 | 0.737 |
4-3-2/M82 | 0.95759 | 1 |
4-3/M82 | 0.96339 | 1 |
5-3/M82 | 0.95396 | 1 |
6-2/M82 | 1.00662 | 1 |
6-3/M82 | 1.01881 | 1 |
7-1/M82 | 0.977 | 0.466 |
7-2/M82 | 1.08689 | 1 |
9-3-2/M82 | 0.83109 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.60355 | |
IL2-6/WTpooled | 1.24225 | 0.456 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.99854 | 1 |
IL12-4/WTpooled | 1.15232 | 0.546 |
IL1-4/WTpooled | 1.00425 | 1 |
WT/WTpooled | 0.9764 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.21098 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03006 | 0.921 |
DC3000/delta hrp 6h | 0.86841 | 0.95 |
DC3000/delta hrp 12h | 1.12173 | 1 |
DC3000/delta hrp 24h | 1.00747 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.04886 | 0.355 |
DC3000 delta B/DC3000 delta AB | 1.08125 | 0.381 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.75337 | 0.328 |
Exp 36h | N/A | N/A |
Exp 60h | 1.60555 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01694 | 1 |
Var 0h | 0.87798 | 0.98 |
Var 12h I row2-row1 | 1.20279 | 0.224 |
Var 12h NI row2-row1 | 1.06661 | 1 |
Var 36h I row2-row1 | 1.01142 | 1 |
Var 36h NI row2-row1 | 0.92909 | 0.645 |
Var 60h I row2-row1 | 0.91804 | 0.374 |
Var 60h NI row2-row1 | 1.05056 | 1 |
Time course 0hI-0hNI | 1.08384 | 0.799 |
Time course 12hI-12hNI | 1.05257 | 0.747 |
Time course 36hI-36hNI | 1.06795 | 0.128 |
Time course 60hI-60hNI | 1.5937 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.9462 | 0.33 |
transgenic ySAMdc/azygous control (breaker) | 1.64091 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.07855 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00707 | 0.619 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.12971 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.02128 | 1 |
Manapal/WT (break) | 0.88423 | 1 |
Manapal/WT (red) | 1.8689 | 0.164 |
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