Expression of 1-1-5.4.11.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.604130.977
27DAP/17DAP0.696540.41
39DAP/27DAP0.900340.652
41DAP/39DAP1.209510.78
42DAP/41DAP1.245650.967
43DAP/42DAP0.722850.773
47DAP/43DAP1.187090.756
52DAP/47DAP1.083350.873
57DAP/52DAP1.490930.987

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference2.001060.007
17DAP/reference2.256320.015
27DAP/reference1.674060.022
39DAP/reference0.846720.261
41DAP/reference1.538790.013
42DAP/reference1.501130.001
43DAP/reference0.909070.728
47DAP/reference1.270450.275
52DAP/reference0.683920.023
57DAP/reference1.2549

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.27334
27DAP/17DAP0.772950.648
39DAP/27DAP0.7046
41DAP/39DAP0.15782
42DAP/41DAP1.878770.015
43DAP/42DAP1.78377
47DAP/43DAP1.078120.973
52DAP/47DAP0.34076
57DAP/52DAP0.85369
57DAP/7DAP1.82977

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.853670.361
17DAP/referenceN/AN/A
27DAP/referenceN/AN/A
39DAP/reference0.71860.23
41DAP/reference1.235050.614
42DAP/referenceN/AN/A
43DAP/referenceN/AN/A
47DAP/reference1.292020.036
52DAP/reference1.2676
57DAP/reference1.915260.612

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.08490.767
17DAP/reference1.117950.415
27DAP/reference1.386590.068
39DAP/reference1.055220.935
41DAP/reference1.152950.814
42DAP/reference1.84646
43DAP/reference1.121150.892
47DAP/reference1.575760.008
52DAP/reference1.268050.015
57DAP/reference1.164420.324

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.86208
17DAP/reference1.096380.767
27DAP/reference0.92785
39DAP/reference0.990130.755
41DAP/reference1.796850.006
42DAP/reference1.346450.184
43DAP/reference2.258520.186
47DAP/reference1.328810.017
52DAP/reference0.98550.821
57DAP/reference1.037860.971

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.42608
26DAP/20DAPN/AN/A
34DAP/26DAP1.159651
51DAP/34DAPN/AN/A
52DAP/51DAP2.16455
53DAP/52DAP0.878580.758
55DAP/53DAP0.853660.675
57DAP/55DAP0.534250.016
62DAP/57DAP0.733580.871
68DAP/62DAP0.960670.863
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.89907

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.276150.277
IL2-6/WTpooled1.031011
IL7-5/WTpooled1.118160.792
IL7-3/WTpooled0.975931
IL12-4/WTpooled1.279570.516
IL1-4/WTpooled0.978051
WT/WTpooled1.052131

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.985251
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.312560.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.495040.15