Tomato Functional Genomics Database (TFGD)

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Expression of 1-1-5.4.11.3

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.60413	0.977
27DAP/17DAP	0.69654	0.41
39DAP/27DAP	0.90034	0.652
41DAP/39DAP	1.20951	0.78
42DAP/41DAP	1.24565	0.967
43DAP/42DAP	0.72285	0.773
47DAP/43DAP	1.18709	0.756
52DAP/47DAP	1.08335	0.873
57DAP/52DAP	1.49093	0.987

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	2.00106	0.007
17DAP/reference	2.25632	0.015
27DAP/reference	1.67406	0.022
39DAP/reference	0.84672	0.261
41DAP/reference	1.53879	0.013
42DAP/reference	1.50113	0.001
43DAP/reference	0.90907	0.728
47DAP/reference	1.27045	0.275
52DAP/reference	0.68392	0.023
57DAP/reference	1.2549	N/A

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.27334	N/A
27DAP/17DAP	0.77295	0.648
39DAP/27DAP	0.7046	N/A
41DAP/39DAP	0.15782	N/A
42DAP/41DAP	1.87877	0.015
43DAP/42DAP	1.78377	N/A
47DAP/43DAP	1.07812	0.973
52DAP/47DAP	0.34076	N/A
57DAP/52DAP	0.85369	N/A
57DAP/7DAP	1.82977	N/A

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.85367	0.361
17DAP/reference	N/A	N/A
27DAP/reference	N/A	N/A
39DAP/reference	0.7186	0.23
41DAP/reference	1.23505	0.614
42DAP/reference	N/A	N/A
43DAP/reference	N/A	N/A
47DAP/reference	1.29202	0.036
52DAP/reference	1.2676	N/A
57DAP/reference	1.91526	0.612

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.0849	0.767
17DAP/reference	1.11795	0.415
27DAP/reference	1.38659	0.068
39DAP/reference	1.05522	0.935
41DAP/reference	1.15295	0.814
42DAP/reference	1.84646	N/A
43DAP/reference	1.12115	0.892
47DAP/reference	1.57576	0.008
52DAP/reference	1.26805	0.015
57DAP/reference	1.16442	0.324

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.86208	N/A
17DAP/reference	1.09638	0.767
27DAP/reference	0.92785	N/A
39DAP/reference	0.99013	0.755
41DAP/reference	1.79685	0.006
42DAP/reference	1.34645	0.184
43DAP/reference	2.25852	0.186
47DAP/reference	1.32881	0.017
52DAP/reference	0.9855	0.821
57DAP/reference	1.03786	0.971

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.42608	N/A
26DAP/20DAP	N/A	N/A
34DAP/26DAP	1.15965	1
51DAP/34DAP	N/A	N/A
52DAP/51DAP	2.16455	N/A
53DAP/52DAP	0.87858	0.758
55DAP/53DAP	0.85366	0.675
57DAP/55DAP	0.53425	0.016
62DAP/57DAP	0.73358	0.871
68DAP/62DAP	0.96067	0.863
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.89907	N/A

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.27615	0.277
IL2-6/WTpooled	1.03101	1
IL7-5/WTpooled	1.11816	0.792
IL7-3/WTpooled	0.97593	1
IL12-4/WTpooled	1.27957	0.516
IL1-4/WTpooled	0.97805	1
WT/WTpooled	1.05213	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	0.98525	1
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.31256	0.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	1.49504	0.15