Expression of 1-1-5.4.11.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.60413 | 0.977 |
27DAP/17DAP | 0.69654 | 0.41 |
39DAP/27DAP | 0.90034 | 0.652 |
41DAP/39DAP | 1.20951 | 0.78 |
42DAP/41DAP | 1.24565 | 0.967 |
43DAP/42DAP | 0.72285 | 0.773 |
47DAP/43DAP | 1.18709 | 0.756 |
52DAP/47DAP | 1.08335 | 0.873 |
57DAP/52DAP | 1.49093 | 0.987 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.00106 | 0.007 |
17DAP/reference | 2.25632 | 0.015 |
27DAP/reference | 1.67406 | 0.022 |
39DAP/reference | 0.84672 | 0.261 |
41DAP/reference | 1.53879 | 0.013 |
42DAP/reference | 1.50113 | 0.001 |
43DAP/reference | 0.90907 | 0.728 |
47DAP/reference | 1.27045 | 0.275 |
52DAP/reference | 0.68392 | 0.023 |
57DAP/reference | 1.2549 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.27334 | |
27DAP/17DAP | 0.77295 | 0.648 |
39DAP/27DAP | 0.7046 | |
41DAP/39DAP | 0.15782 | |
42DAP/41DAP | 1.87877 | 0.015 |
43DAP/42DAP | 1.78377 | |
47DAP/43DAP | 1.07812 | 0.973 |
52DAP/47DAP | 0.34076 | |
57DAP/52DAP | 0.85369 | |
57DAP/7DAP | 1.82977 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85367 | 0.361 |
17DAP/reference | N/A | N/A |
27DAP/reference | N/A | N/A |
39DAP/reference | 0.7186 | 0.23 |
41DAP/reference | 1.23505 | 0.614 |
42DAP/reference | N/A | N/A |
43DAP/reference | N/A | N/A |
47DAP/reference | 1.29202 | 0.036 |
52DAP/reference | 1.2676 | |
57DAP/reference | 1.91526 | 0.612 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0849 | 0.767 |
17DAP/reference | 1.11795 | 0.415 |
27DAP/reference | 1.38659 | 0.068 |
39DAP/reference | 1.05522 | 0.935 |
41DAP/reference | 1.15295 | 0.814 |
42DAP/reference | 1.84646 | |
43DAP/reference | 1.12115 | 0.892 |
47DAP/reference | 1.57576 | 0.008 |
52DAP/reference | 1.26805 | 0.015 |
57DAP/reference | 1.16442 | 0.324 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86208 | |
17DAP/reference | 1.09638 | 0.767 |
27DAP/reference | 0.92785 | |
39DAP/reference | 0.99013 | 0.755 |
41DAP/reference | 1.79685 | 0.006 |
42DAP/reference | 1.34645 | 0.184 |
43DAP/reference | 2.25852 | 0.186 |
47DAP/reference | 1.32881 | 0.017 |
52DAP/reference | 0.9855 | 0.821 |
57DAP/reference | 1.03786 | 0.971 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.42608 | |
26DAP/20DAP | N/A | N/A |
34DAP/26DAP | 1.15965 | 1 |
51DAP/34DAP | N/A | N/A |
52DAP/51DAP | 2.16455 | |
53DAP/52DAP | 0.87858 | 0.758 |
55DAP/53DAP | 0.85366 | 0.675 |
57DAP/55DAP | 0.53425 | 0.016 |
62DAP/57DAP | 0.73358 | 0.871 |
68DAP/62DAP | 0.96067 | 0.863 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.89907 | |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.27615 | 0.277 |
IL2-6/WTpooled | 1.03101 | 1 |
IL7-5/WTpooled | 1.11816 | 0.792 |
IL7-3/WTpooled | 0.97593 | 1 |
IL12-4/WTpooled | 1.27957 | 0.516 |
IL1-4/WTpooled | 0.97805 | 1 |
WT/WTpooled | 1.05213 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.98525 | 1 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.31256 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.49504 | 0.15 |
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