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Expression of 1-1-5.4.9.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.705850.043
27DAP/17DAP1.07531
39DAP/27DAP1.879560.098
41DAP/39DAP1.180530.63
42DAP/41DAP1.163070.926
43DAP/42DAP1.519630.07
47DAP/43DAP1.176810.776
52DAP/47DAP0.796830.526
57DAP/52DAP1.263430.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.996590.679
17DAP/reference1.18230.018
27DAP/reference1.11670.348
39DAP/reference1.094880.068
41DAP/reference1.291170.015
42DAP/reference1.168190.041
43DAP/reference1.122890.252
47DAP/reference0.933060.191
52DAP/reference0.791670.048
57DAP/reference0.641250.019

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.944870.509
27DAP/17DAP1.057040.798
39DAP/27DAP1.083070.465
41DAP/39DAP0.826990.108
42DAP/41DAP1.101660.251
43DAP/42DAP1.153760.019
47DAP/43DAP0.966030.774
52DAP/47DAP0.992770.962
57DAP/52DAP0.928350.331
57DAP/7DAP1.108211

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.007981
17DAP/reference1.30190.03
27DAP/reference1.216070.011
39DAP/reference1.344450.013
41DAP/reference1.286670.05
42DAP/reference1.34330.009
43DAP/reference1.351670.009
47DAP/reference1.200970.404
52DAP/reference1.338490.017
57DAP/reference1.401370.01

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.139060.087
17DAP/reference1.097930.243
27DAP/reference1.016020.735
39DAP/reference0.795030.065
41DAP/reference0.985560.481
42DAP/reference0.773220.019
43DAP/reference0.955540.507
47DAP/reference0.861160.056
52DAP/reference0.878110.06
57DAP/reference1.257220.131

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.182980.202
17DAP/reference1.014850.839
27DAP/reference1.513280.021
39DAP/reference1.284570.045
41DAP/reference1.207680.222
42DAP/reference1.278170.15
43DAP/reference1.214110.515
47DAP/reference1.072590.48
52DAP/reference1.220420.225
57DAP/reference0.574790.021

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.991191
26DAP/20DAP0.905520.512
34DAP/26DAP0.997741
51DAP/34DAP0.963070.77
52DAP/51DAP1.023750.873
53DAP/52DAP1.018330.935
55DAP/53DAP1.012290.994
57DAP/55DAP1.142690.694
62DAP/57DAP1.136150.35
68DAP/62DAP0.70060.177
68DAP/14DAP0.617760.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.260180.022

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.736190.029
Immature Eggplant/Mature Eggplant2.25N/A
Ripe Pepper/Ripe Tomato0.174310.224
Mature Eggplant/Ripe Tomato0.229180.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.864210.934
1-1-2/M822.19281
12-2/M821.23110.519
12-4/M821.125091
1-3/M821.032011
2-1-1/M821.121651
2-1/M820.67850.322
2-6/M821.255130.374
3-2/M821.217140.84
4-1-1/M820.865081
4-1/M820.69026N/A
4-3-2/M820.824371
4-3/M821.59358N/A
5-3/M820.93821
6-2/M821.09776N/A
6-3/M820.941091
7-1/M820.675140.803
7-2/M821.141491
9-3-2/M821.670051

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.927840.473
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.409661
IL12-4/WTpooled1.008061
IL1-4/WTpooled1.6979N/A
WT/WTpooled1.010951

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.758840.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.97721
DC3000/delta hrp 6h0.869270.95
DC3000/delta hrp 12h1.130391
DC3000/delta hrp 24h1.478960.048

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.959810.691
DC3000 delta B/DC3000 delta AB0.975680.849

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.731530.245
Exp 36h0.817530.623
Exp 60h0.59510.386

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.021031
Var 0h1.046480.98
Var 12h I row2-row11.152520.473
Var 12h NI row2-row10.943550.906
Var 36h I row2-row11.017211
Var 36h NI row2-row10.978540.743
Var 60h I row2-row11.369690.562
Var 60h NI row2-row11.232090.701
Time course 0hI-0hNI1.127950.574
Time course 12hI-12hNI0.820560.035
Time course 36hI-36hNI0.710390.023
Time course 60hI-60hNI0.634420.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.63380.255
transgenic ySAMdc/azygous control (breaker)0.555180.15
transgenic ySAMdc/azygous control (red)7.387320.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.071430.247

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.465630.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.394110.172
Manapal/WT (break)0.053920.285
Manapal/WT (red)0.045430.181