Expression of 1-1-5.4.9.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.031560.977
27DAP/17DAP0.816790.572
39DAP/27DAP1.458550.857
41DAP/39DAP2.079640.217
42DAP/41DAP1.060021
43DAP/42DAP0.816150.783
47DAP/43DAP0.896390.429
52DAP/47DAP0.972990.771
57DAP/52DAP1.238190.963

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.229120.303
17DAP/reference1.22561
27DAP/reference1.358550.156
39DAP/reference1.14210.111
41DAP/reference1.327380.421
42DAP/reference1.392780.002
43DAP/reference1.063370.982
47DAP/reference1.280890.046
52DAP/reference0.988550.564
57DAP/reference0.995560.805

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAPN/AN/A
27DAP/17DAP1.195970.909
39DAP/27DAP0.833010.607
41DAP/39DAP1.69880.157
42DAP/41DAP0.677970.332
43DAP/42DAPN/AN/A
47DAP/43DAP0.798750.011
52DAP/47DAP1.128370.927
57DAP/52DAP2.01301
57DAP/7DAP0.99761

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.96333
17DAP/reference1.5341
27DAP/reference1.10567
39DAP/referenceN/AN/A
41DAP/reference1.359750.701
42DAP/reference0.638740.235
43DAP/reference1.618080.873
47DAP/reference0.858870.293
52DAP/reference1.34933
57DAP/referenceN/AN/A

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.562530.164
17DAP/reference0.878160.536
27DAP/reference0.93748
39DAP/reference0.21250.007
41DAP/reference1.025491
42DAP/reference1.174271
43DAP/reference1.040310.885
47DAP/reference0.90950.338
52DAP/reference0.241840.003
57DAP/reference0.347380.019

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.83758
17DAP/reference0.63038
27DAP/reference0.84776
39DAP/reference0.79841
41DAP/referenceN/AN/A
42DAP/reference1.349720.233
43DAP/reference1.375810.03
47DAP/reference1.100741
52DAP/reference0.887760.228
57DAP/reference1.362010.462

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.82531
26DAP/20DAPN/AN/A
34DAP/26DAP1.500040.542
51DAP/34DAP0.623920.394
52DAP/51DAPN/AN/A
53DAP/52DAP1.071710.895
55DAP/53DAP0.976220.5
57DAP/55DAP1.04565
62DAP/57DAPN/AN/A
68DAP/62DAP1.255770.029
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.012360.774

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.84839
IL2-6/WTpooled0.582310.383
IL7-5/WTpooled1.28740.792
IL7-3/WTpooled1.123681
IL12-4/WTpooled1.180240.673
IL1-4/WTpooled1.182231
WT/WTpooled0.977021

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.989231
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.911630.286

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.948571
Manapal/WT (red)1.174530.222