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Expression of 1-1-6.1.11.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.124080.725
27DAP/17DAP1.123680.845
39DAP/27DAP0.867060.447
41DAP/39DAP1.124960.504
42DAP/41DAP1.034231
43DAP/42DAP1.066621
47DAP/43DAP1.058550.618
52DAP/47DAP0.865190.607
57DAP/52DAP0.976780.957

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference2.744670.017
17DAP/reference0.978260.904
27DAP/referenceN/AN/A
39DAP/reference0.618250.124
41DAP/reference1.642920.312
42DAP/reference0.898770.337
43DAP/referenceN/AN/A
47DAP/referenceN/AN/A
52DAP/reference1.406920.912
57DAP/reference0.83921N/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.949450.496
27DAP/17DAP1.032180.885
39DAP/27DAP1.03680.685
41DAP/39DAP1.06490.59
42DAP/41DAP1.061620.46
43DAP/42DAP0.980120.751
47DAP/43DAP1.027740.88
52DAP/47DAP0.974040.893
57DAP/52DAP1.023160.858
57DAP/7DAP0.9741

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.99440.613
17DAP/reference0.964280.064
27DAP/reference0.968970.185
39DAP/reference1.018930.252
41DAP/reference1.175210.416
42DAP/reference1.009111
43DAP/reference1.02020.974
47DAP/reference1.065770.48
52DAP/reference1.044320.171
57DAP/reference0.953040.071

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.876920.362
17DAP/reference0.974950.659
27DAP/reference0.63103N/A
39DAP/reference0.991770.603
41DAP/reference1.082291
42DAP/reference1.70077N/A
43DAP/reference0.696370.336
47DAP/reference0.92632N/A
52DAP/reference0.930680.066
57DAP/reference1.052590.581

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.926260.034
17DAP/reference0.99180.792
27DAP/reference0.94250.069
39DAP/reference0.977360.147
41DAP/reference0.992770.618
42DAP/reference0.911810.016
43DAP/reference0.893050.15
47DAP/referenceN/AN/A
52DAP/reference0.93960.25
57DAP/reference0.851420.034

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.00460.966
26DAP/20DAP0.980071
34DAP/26DAP1.03811
51DAP/34DAP0.945650.571
52DAP/51DAP0.987731
53DAP/52DAP1.10981N/A
55DAP/53DAP1.09815N/A
57DAP/55DAP1.114460.87
62DAP/57DAP0.968440.994
68DAP/62DAP0.980380.863
68DAP/14DAP1.247530.049

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.986870.635

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.901780.447
Mature Green Tomato/Ripe Tomato1.04620.835
Immature Eggplant/Mature Eggplant1.245250.174
Ripe Pepper/Ripe Tomato0.97651
Mature Eggplant/Ripe Tomato1.022231

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.998841
1-1-2/M821.049770.977
12-2/M821.005471
12-4/M820.998571
1-3/M820.994291
2-1-1/M820.94650.683
2-1/M821.270581
2-6/M820.953581
3-2/M821.000151
4-1-1/M820.99061
4-1/M820.720871
4-3-2/M820.78120.698
4-3/M820.922820.578
5-3/M820.978021
6-2/M820.9431
6-3/M821.024641
7-1/M821.0131
7-2/M820.979681
9-3-2/M820.877720.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.038330.277
IL2-6/WTpooled1.118570.788
IL7-5/WTpooled0.833061
IL7-3/WTpooled1.207590.362
IL12-4/WTpooled1.24460.624
IL1-4/WTpooled1.014761
WT/WTpooled1.017571

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.035250.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.031910.921
DC3000/delta hrp 6h1.218121
DC3000/delta hrp 12h1.059631
DC3000/delta hrp 24h1.094650.516

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.052620.441
DC3000 delta B/DC3000 delta AB1.03810.579

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.245580.489
Exp 60h1.135630.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.001931
Var 0h0.990091
Var 12h I row2-row11.138530.228
Var 12h NI row2-row10.902890.494
Var 36h I row2-row10.955781
Var 36h NI row2-row10.907450.645
Var 60h I row2-row11.458160.562
Var 60h NI row2-row11.093780.904
Time course 0hI-0hNI1.075860.799
Time course 12hI-12hNI1.012730.854
Time course 36hI-36hNI0.965620.19
Time course 60hI-60hNI1.069650.187

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.027580.748
transgenic ySAMdc/azygous control (breaker)1.305060.248
transgenic ySAMdc/azygous control (red)1.130760.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.797610.172
Manapal/WT (break)1.088890.381
Manapal/WT (red)1.013321