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Expression of 1-1-6.1.13.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.986310.83
27DAP/17DAP1.273490.697
39DAP/27DAP0.988980.733
41DAP/39DAP1.012541
42DAP/41DAP1.237540.39
43DAP/42DAP1.073551
47DAP/43DAP1.305020.609
52DAP/47DAP0.824230.545
57DAP/52DAP0.981160.978

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.848770.106
17DAP/reference1.245760.017
27DAP/reference1.059460.696
39DAP/reference1.152690.229
41DAP/reference1.094330.393
42DAP/reference0.981080.398
43DAP/reference0.971250.653
47DAP/reference0.974450.418
52DAP/reference0.821240.049
57DAP/reference0.810820.016

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.125230.445
27DAP/17DAP1.039550.863
39DAP/27DAP0.88680.198
41DAP/39DAP0.801220.093
42DAP/41DAP1.009140.887
43DAP/42DAP0.882380.105
47DAP/43DAP1.167340.157
52DAP/47DAP0.931030.694
57DAP/52DAP1.056850.899
57DAP/7DAP0.880851

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.993320.682
17DAP/reference0.981610.518
27DAP/reference0.918250.2
39DAP/reference1.009390.745
41DAP/reference0.944840.375
42DAP/reference0.879520.123
43DAP/reference0.758040.017
47DAP/reference0.858210.383
52DAP/reference0.818720.057
57DAP/reference0.862470.128

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.932340.362
17DAP/reference1.150770.264
27DAP/reference1.043350.692
39DAP/reference0.932710.306
41DAP/reference0.871820.108
42DAP/reference1.049650.777
43DAP/reference0.876750.307
47DAP/reference0.932390.194
52DAP/reference0.934270.203
57DAP/reference1.431210.182

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.053950.481
17DAP/reference0.930560.417
27DAP/reference0.9290.376
39DAP/reference0.932410.299
41DAP/reference1.023280.984
42DAP/reference0.946810.552
43DAP/reference0.896020.044
47DAP/reference1.061931
52DAP/reference1.132070.609
57DAP/reference0.893560.147

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.056851
26DAP/20DAP1.49440.347
34DAP/26DAP0.778090.394
51DAP/34DAP1.206690.936
52DAP/51DAP0.904171
53DAP/52DAP0.91620.695
55DAP/53DAP1.23080.504
57DAP/55DAP0.933160.828
62DAP/57DAP1.060931
68DAP/62DAP1.059151
68DAP/14DAP0.634460.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.41590.016

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.066640.523
Immature Eggplant/Mature Eggplant1.02694N/A
Ripe Pepper/Ripe Tomato0.477850.293
Mature Eggplant/Ripe Tomato0.56140.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.978180.961
1-1-2/M820.960981
12-2/M820.838360.678
12-4/M821.009281
1-3/M821.498330.277
2-1-1/M821.164540.764
2-1/M820.901730.74
2-6/M821.007611
3-2/M821.10493N/A
4-1-1/M821.331061
4-1/M820.81982N/A
4-3-2/M821.172960.284
4-3/M821.148711
5-3/M821.084351
6-2/M821.338961
6-3/M821.121831
7-1/M821.08481
7-2/M821.188040.385
9-3-2/M821.083461

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.68206N/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.396131
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled1.15420.673
IL1-4/WTpooled0.828490.699
WT/WTpooled0.74301N/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.129330.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.089710.846
DC3000/delta hrp 6h1.058941
DC3000/delta hrp 12h1.166591
DC3000/delta hrp 24h1.130670.283

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.829270.042
DC3000 delta B/DC3000 delta AB0.945670.619

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.197150.693
Exp 60h0.926090.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.950141
Var 0h0.94951
Var 12h I row2-row10.983441
Var 12h NI row2-row11.024841
Var 36h I row2-row11.280590.742
Var 36h NI row2-row10.983210.852
Var 60h I row2-row11.144280.543
Var 60h NI row2-row10.808170.335
Time course 0hI-0hNI1.00131
Time course 12hI-12hNI0.984840.909
Time course 36hI-36hNI1.172790.05
Time course 60hI-60hNI1.407060.01

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.985390.722
transgenic ySAMdc/azygous control (breaker)1.207720.178
transgenic ySAMdc/azygous control (red)1.013880.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.956880.237

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.803350.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.810351
Manapal/WT (break)0.841350.333
Manapal/WT (red)1.189020.222