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Expression of 1-1-6.1.19.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.034620.912
27DAP/17DAP1.035420.92
39DAP/27DAP0.831610.435
41DAP/39DAP1.173330.413
42DAP/41DAP0.986011
43DAP/42DAP1.018131
47DAP/43DAP0.997710.966
52DAP/47DAP1.033521
57DAP/52DAP0.986620.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.999060.771
17DAP/reference1.116240.096
27DAP/reference1.083660.271
39DAP/reference1.079570.165
41DAP/reference1.116460.093
42DAP/reference1.095380.026
43DAP/reference1.106760.287
47DAP/reference1.099940.042
52DAP/reference0.893150.215
57DAP/reference0.880740.221

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.631910.044
27DAP/17DAP2.71240.664
39DAP/27DAP1.136180.575
41DAP/39DAP1.082360.887
42DAP/41DAP0.819210.039
43DAP/42DAP1.084510.585
47DAP/43DAP1.105120.848
52DAP/47DAP0.963630.886
57DAP/52DAP1.043521
57DAP/7DAP1.343151

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.883810.115
17DAP/reference0.959880.389
27DAP/reference0.810190.02
39DAP/reference0.719920.023
41DAP/reference0.774980.116
42DAP/reference0.722930.058
43DAP/reference0.840320.059
47DAP/reference1.086661
52DAP/reference0.649980.011
57DAP/reference0.920250.232

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.929980.362
17DAP/reference0.86720.037
27DAP/reference0.817950.115
39DAP/reference0.918460.129
41DAP/reference0.872310.047
42DAP/reference0.928470.189
43DAP/reference0.949010.423
47DAP/reference1.113810.009
52DAP/reference0.958630.28
57DAP/reference1.088550.229

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.85530.077
17DAP/reference0.865860.214
27DAP/reference0.760170.028
39DAP/reference0.735440.054
41DAP/reference0.83550.064
42DAP/reference0.875850.134
43DAP/reference0.860890.15
47DAP/reference1.109430.704
52DAP/reference1.163420.631
57DAP/reference1.404510.311

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.183030.945
26DAP/20DAP1.158680.778
34DAP/26DAP1.016981
51DAP/34DAP1.289360.535
52DAP/51DAP0.977681
53DAP/52DAP1.09890.819
55DAP/53DAP1.043820.964
57DAP/55DAP1.10940.805
62DAP/57DAP1.103810.723
68DAP/62DAP0.939050.668
68DAP/14DAP0.809481

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.7570.057

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.013681
Mature Green Tomato/Ripe Tomato0.929410.287
Immature Eggplant/Mature Eggplant1.254130.222
Ripe Pepper/Ripe Tomato0.697360.224
Mature Eggplant/Ripe Tomato0.68350.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.904010.804
12-2/M821.037121
12-4/M821.007441
1-3/M820.827210.441
2-1-1/M821.244060.457
2-1/M821.2897N/A
2-6/M821.13170.695
3-2/M820.872371
4-1-1/M821.020461
4-1/M820.879090.737
4-3-2/M820.922931
4-3/M820.869591
5-3/M821.028481
6-2/M821.198911
6-3/M821.136391
7-1/M820.85251
7-2/M821.047021
9-3-2/M820.905420.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled1.26518N/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.161160.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.071341
DC3000/delta hrp 6h1.029421
DC3000/delta hrp 12h1.118661
DC3000/delta hrp 24h1.247450.118

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.42815N/A
DC3000 delta B/DC3000 delta AB1.238080.412

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.874871
Exp 36h1.464420.489
Exp 60h1.023921

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.019811
Var 0h0.95541
Var 12h I row2-row11.01691
Var 12h NI row2-row10.78123N/A
Var 36h I row2-row11.494920.742
Var 36h NI row2-row11.306781
Var 60h I row2-row11.131111
Var 60h NI row2-row11.210430.904
Time course 0hI-0hNI1.375210.662
Time course 12hI-12hNI0.975980.831
Time course 36hI-36hNI1.092330.975
Time course 60hI-60hNI1.806080.029

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.950340.662
transgenic ySAMdc/azygous control (breaker)0.862960.251
transgenic ySAMdc/azygous control (red)1.028460.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.027690.35

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.768150.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.139161
Manapal/WT (red)0.854660.187