Tomato Functional Genomics Database (TFGD)

TFGD

Home

Expression

Metabolite

sRNA

Links

Contact

Expression of 1-1-6.2.1.1

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.14536	0.575
27DAP/17DAP	1.15799	0.845
39DAP/27DAP	1.35382	0.277
41DAP/39DAP	0.86412	0.445
42DAP/41DAP	1.32061	0.397
43DAP/42DAP	1.10218	1
47DAP/43DAP	0.85656	0.517
52DAP/47DAP	0.94381	0.758
57DAP/52DAP	1.02646	0.98

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.00802	1
17DAP/reference	1.00631	1
27DAP/reference	1.02128	0.759
39DAP/reference	0.96734	0.6
41DAP/reference	0.94939	0.341
42DAP/reference	1.09039	0.037
43DAP/reference	1.06231	0.133
47DAP/reference	1.14318	0.025
52DAP/reference	1.08322	0.149
57DAP/reference	1.07617	0.321

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.95456	0.663
27DAP/17DAP	1.13123	0.671
39DAP/27DAP	0.96769	0.759
41DAP/39DAP	1.01717	1
42DAP/41DAP	1.00847	1
43DAP/42DAP	1.10891	0.112
47DAP/43DAP	0.92055	0.534
52DAP/47DAP	1.15481	0.508
57DAP/52DAP	1.06293	0.871
57DAP/7DAP	1.18178	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.75635	0.091
17DAP/reference	0.77337	0.064
27DAP/reference	0.73408	0.01
39DAP/reference	0.86892	0.039
41DAP/reference	0.79537	0.012
42DAP/reference	0.89304	0.117
43DAP/reference	0.82613	0.072
47DAP/reference	0.9565	0.504
52DAP/reference	0.73583	0.015
57DAP/reference	0.76078	0.045

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.03741	0.75
17DAP/reference	1.11603	0.171
27DAP/reference	0.97618	0.467
39DAP/reference	1.10519	0.263
41DAP/reference	0.99391	0.584
42DAP/reference	0.99142	0.594
43DAP/reference	0.97929	0.62
47DAP/reference	0.97999	0.5
52DAP/reference	1.06791	0.168
57DAP/reference	0.9565	0.338

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.82642	0.092
17DAP/reference	1.06559	0.918
27DAP/reference	0.68897	0.056
39DAP/reference	0.86105	0.199
41DAP/reference	0.88208	0.293
42DAP/reference	0.71397	0.028
43DAP/reference	0.83504	0.081
47DAP/reference	1.03834	0.388
52DAP/reference	0.91916	0.464
57DAP/reference	0.98054	0.593

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.06803	0.966
26DAP/20DAP	1.43495	0.12
34DAP/26DAP	1.1178	1
51DAP/34DAP	1.0706	0.925
52DAP/51DAP	0.91749	1
53DAP/52DAP	0.77185	0.066
55DAP/53DAP	0.85351	0.363
57DAP/55DAP	0.87399	0.508
62DAP/57DAP	1.21109	0.723
68DAP/62DAP	1.26256	0.413
68DAP/14DAP	1.55876	0.469

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.06667	0.496

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	2.45185	0.068
Mature Green Tomato/Ripe Tomato	1.87961	0.149
Immature Eggplant/Mature Eggplant	1.16295	0.142
Ripe Pepper/Ripe Tomato	0.44862	0.293
Mature Eggplant/Ripe Tomato	0.53126	1

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	1.03366	1
1-1-2/M82	1.14582	N/A
12-2/M82	0.99852	1
12-4/M82	0.99205	1
1-3/M82	1.12025	1
2-1-1/M82	1.02903	0.249
2-1/M82	0.96597	1
2-6/M82	1.21432	0.385
3-2/M82	N/A	N/A
4-1-1/M82	0.99486	1
4-1/M82	N/A	N/A
4-3-2/M82	1.29153	N/A
4-3/M82	1.00657	1
5-3/M82	1.04536	1
6-2/M82	1.34413	0.222
6-3/M82	1.02588	1
7-1/M82	0.88588	N/A
7-2/M82	1.00237	1
9-3-2/M82	0.92121	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	N/A	N/A
IL12-4/WTpooled	N/A	N/A
IL1-4/WTpooled	1.14438	1
WT/WTpooled	0.82924	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	1.07875	1

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.94928	1
DC3000/delta hrp 6h	1.13057	1
DC3000/delta hrp 12h	0.96992	1
DC3000/delta hrp 24h	1.055	0.633

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	0.65216	N/A
DC3000 delta B/DC3000 delta AB	1.00075	1

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	0.79283	1
Exp 36h	1.23794	0.693
Exp 60h	1.08886	1

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	0.9861	1
Var 0h	1.00343	1
Var 12h I row2-row1	0.97202	0.948
Var 12h NI row2-row1	1.07123	1
Var 36h I row2-row1	1.3099	0.908
Var 36h NI row2-row1	1.02878	1
Var 60h I row2-row1	0.8931	0.952
Var 60h NI row2-row1	0.93216	0.818
Time course 0hI-0hNI	0.92913	0.482
Time course 12hI-12hNI	0.95747	0.675
Time course 36hI-36hNI	1.05552	0.513
Time course 60hI-60hNI	0.8484	0.047

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	1.16536	0.305
transgenic ySAMdc/azygous control (breaker)	1.03531	0.248
transgenic ySAMdc/azygous control (red)	1.00507	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.03938	0.148

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.07302	0.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	0.79102	0.172
Manapal/WT (break)	0.79327	0.333
Manapal/WT (red)	0.77255	0.187