Expression of 1-1-6.2.12.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.83567 | 0.285 |
27DAP/17DAP | 0.96683 | 0.923 |
39DAP/27DAP | 1.26368 | 0.473 |
41DAP/39DAP | 0.85075 | 0.445 |
42DAP/41DAP | 0.95413 | 1 |
43DAP/42DAP | 1.1831 | 0.772 |
47DAP/43DAP | 1.17837 | 0.49 |
52DAP/47DAP | 1.0956 | 0.913 |
57DAP/52DAP | 1.03258 | 0.993 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88371 | 0.149 |
17DAP/reference | 1.07609 | 0.492 |
27DAP/reference | 0.95469 | 0.497 |
39DAP/reference | 0.9918 | 0.855 |
41DAP/reference | 1.12645 | 0.102 |
42DAP/reference | 0.77652 | 0.014 |
43DAP/reference | 1.05032 | 0.569 |
47DAP/reference | 0.81353 | 0.01 |
52DAP/reference | 0.86121 | 0.21 |
57DAP/reference | 0.92424 | 0.235 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.86727 | 0.135 |
27DAP/17DAP | 1.06914 | 0.859 |
39DAP/27DAP | 0.85473 | 0.181 |
41DAP/39DAP | 0.95899 | 0.875 |
42DAP/41DAP | 0.965 | 0.717 |
43DAP/42DAP | 1.14087 | 0.25 |
47DAP/43DAP | 1.03619 | 0.914 |
52DAP/47DAP | 0.97517 | 0.902 |
57DAP/52DAP | 1.05646 | 0.703 |
57DAP/7DAP | 1.11526 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96653 | 0.55 |
17DAP/reference | 1.04734 | 0.822 |
27DAP/reference | 1.06818 | 0.551 |
39DAP/reference | 1.03859 | 0.909 |
41DAP/reference | 0.86227 | 0.064 |
42DAP/reference | 0.98519 | 0.531 |
43DAP/reference | 0.99192 | 0.665 |
47DAP/reference | 0.96846 | 0.671 |
52DAP/reference | 0.88924 | 0.232 |
57DAP/reference | 0.90504 | 0.183 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07437 | 0.776 |
17DAP/reference | 1.2477 | 0.508 |
27DAP/reference | 1.01394 | 0.765 |
39DAP/reference | 0.81042 | 0.144 |
41DAP/reference | 0.87999 | 0.242 |
42DAP/reference | 0.86105 | 0.15 |
43DAP/reference | 0.95103 | 0.67 |
47DAP/reference | 1.00758 | 1 |
52DAP/reference | 0.96014 | 0.576 |
57DAP/reference | 1.15199 | 0.494 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99045 | 0.653 |
17DAP/reference | 1.12068 | 0.221 |
27DAP/reference | 1.16284 | 0.179 |
39DAP/reference | 1.09969 | 0.264 |
41DAP/reference | 1.09803 | 0.343 |
42DAP/reference | 1.03777 | 0.816 |
43DAP/reference | 0.85843 | 0.256 |
47DAP/reference | 0.91723 | 0.269 |
52DAP/reference | 1.15321 | 0.549 |
57DAP/reference | 0.70238 | 0.039 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.45341 | 0.966 |
26DAP/20DAP | 1.20246 | 0.256 |
34DAP/26DAP | 0.96133 | 0.954 |
51DAP/34DAP | 1.10669 | 0.445 |
52DAP/51DAP | 1.0599 | 0.689 |
53DAP/52DAP | 0.89298 | 0.393 |
55DAP/53DAP | 1.14787 | 0.29 |
57DAP/55DAP | 1.09324 | 0.997 |
62DAP/57DAP | 0.69003 | 0.05 |
68DAP/62DAP | 1.27196 | 0.657 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.84496 | 0.285 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.977 | 0.611 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.75478 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.16221 | 0.508 |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.78006 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.34024 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.14991 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.85321 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.14657 | 1 |
IL12-4/WTpooled | 1.05578 | 0.522 |
IL1-4/WTpooled | 2.49132 | 1 |
WT/WTpooled | 0.91846 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.7963 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.48725 | 0.724 |
DC3000/delta hrp 6h | 1.21723 | 1 |
DC3000/delta hrp 12h | 0.97071 | |
DC3000/delta hrp 24h | 1.04642 | 0.84 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.86318 | 0.293 |
DC3000 delta B/DC3000 delta AB | 1.76761 | 0.311 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.87025 | 1 |
Exp 36h | 1.02017 | 1 |
Exp 60h | 0.92899 | 0.454 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03812 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.10929 | 0.613 |
Var 12h NI row2-row1 | 0.99421 | 1 |
Var 36h I row2-row1 | 0.71785 | 1 |
Var 36h NI row2-row1 | 1.02479 | 1 |
Var 60h I row2-row1 | 0.86035 | 0.374 |
Var 60h NI row2-row1 | 0.9908 | 1 |
Time course 0hI-0hNI | 0.93084 | 0.45 |
Time course 12hI-12hNI | 1.0135 | 0.816 |
Time course 36hI-36hNI | 0.93419 | 0.306 |
Time course 60hI-60hNI | 0.7709 | 0.015 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99256 | 0.862 |
transgenic ySAMdc/azygous control (breaker) | 0.71573 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.87616 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9787 | 0.237 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.99954 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.87569 | 0.083 |
Manapal/WT (break) | 1.33136 | 0.381 |
Manapal/WT (red) | 1.32783 | 0.222 |
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