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Expression of 1-1-6.2.14.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.701310.051
27DAP/17DAP0.82110.536
39DAP/27DAP1.679160.056
41DAP/39DAP0.622880.07
42DAP/41DAP1.162110.825
43DAP/42DAP0.980110.925
47DAP/43DAP0.912270.68
52DAP/47DAP0.883440.688
57DAP/52DAP1.325250.616

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.750310.031
17DAP/reference1.281750.229
27DAP/reference1.090130.623
39DAP/reference1.191120.76
41DAP/reference1.133410.587
42DAP/reference1.819580.001
43DAP/reference1.509460.014
47DAP/reference1.576790.001
52DAP/reference0.853130.111
57DAP/reference1.230050.027

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.020740.91
27DAP/17DAP0.983480.887
39DAP/27DAP0.832920.041
41DAP/39DAP1.169820.861
42DAP/41DAP1.110450.615
43DAP/42DAP0.851930.034
47DAP/43DAP1.048750.61
52DAP/47DAP0.918640.645
57DAP/52DAP0.947270.598
57DAP/7DAP0.763061

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.749530.024
17DAP/reference1.995240.006
27DAP/reference1.948430.006
39DAP/reference1.864190.005
41DAP/reference1.867710.009
42DAP/reference1.87180.007
43DAP/reference1.639750.007
47DAP/reference1.779590.015
52DAP/reference2.13890.007
57DAP/reference2.078770.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.430410.056
17DAP/reference1.677620.007
27DAP/reference1.862150.014
39DAP/reference1.331120.024
41DAP/reference1.543560.005
42DAP/reference1.673080.007
43DAP/reference1.276720.308
47DAP/reference1.911230.011
52DAP/reference0.959740.351
57DAP/reference1.125170.345

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.59740.016
17DAP/reference1.417220.113
27DAP/reference1.493130.023
39DAP/reference1.680150.006
41DAP/reference1.433520.008
42DAP/reference1.525830.047
43DAP/reference1.833120.007
47DAP/reference1.167210.196
52DAP/reference1.562680.03
57DAP/reference1.373960.053

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.965171
26DAP/20DAP1.380480.394
34DAP/26DAP0.985470.998
51DAP/34DAP0.821240.286
52DAP/51DAP1.013831
53DAP/52DAP0.67450.109
55DAP/53DAP0.717960.111
57DAP/55DAP1.302510.764
62DAP/57DAP1.680040.158
68DAP/62DAP0.883260.668
68DAP/14DAP0.798911

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.207430.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.748120.208
Mature Green Tomato/Ripe Tomato1.026440.898
Immature Eggplant/Mature Eggplant1.033080.485
Ripe Pepper/Ripe Tomato0.866850.224
Mature Eggplant/Ripe Tomato1.136831

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.057720.877
1-1-2/M821.139421
12-2/M821.024441
12-4/M821.108411
1-3/M821.554210.277
2-1-1/M820.984911
2-1/M820.809180.345
2-6/M821.03440.405
3-2/M820.941481
4-1-1/M821.274390.938
4-1/M821.502580.853
4-3-2/M821.468880.241
4-3/M821.193941
5-3/M821.087471
6-2/M821.108931
6-3/M820.987371
7-1/M820.873690.803
7-2/M821.189060.291
9-3-2/M821.303451

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.048921
IL2-6/WTpooled0.899541
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.391270.362
IL12-4/WTpooled1.22460.624
IL1-4/WTpooled1.004031
WT/WTpooled1.098151

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.004321

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.041410.921
DC3000/delta hrp 6h1.122460.978
DC3000/delta hrp 12h0.920271
DC3000/delta hrp 24h1.140590.192

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.070510.134
DC3000 delta B/DC3000 delta AB1.244210.234

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.134881
Exp 36h1.471330.693
Exp 60h1.463830.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.993081
Var 0h1.077630.782
Var 12h I row2-row10.889360.357
Var 12h NI row2-row11.031511
Var 36h I row2-row11.061771
Var 36h NI row2-row10.746960.378
Var 60h I row2-row10.861570.832
Var 60h NI row2-row10.763040.292
Time course 0hI-0hNI0.968650.827
Time course 12hI-12hNI1.045980.587
Time course 36hI-36hNI1.485990.007
Time course 60hI-60hNI2.818450.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.955680.485
transgenic ySAMdc/azygous control (breaker)1.050640.248
transgenic ySAMdc/azygous control (red)1.134040.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.147170.317

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.778440.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.927481
Manapal/WT (break)0.991471
Manapal/WT (red)1.164630.413