Expression of 1-1-6.2.5.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.01884 | 0.779 |
27DAP/17DAP | 0.96246 | 0.857 |
39DAP/27DAP | 0.9265 | 0.67 |
41DAP/39DAP | 1.14275 | 0.88 |
42DAP/41DAP | 1.16539 | 0.898 |
43DAP/42DAP | 0.87418 | 0.801 |
47DAP/43DAP | 0.98144 | 0.876 |
52DAP/47DAP | 0.90709 | 0.72 |
57DAP/52DAP | 0.9076 | 0.912 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91858 | 0.14 |
17DAP/reference | 1.09843 | 0.653 |
27DAP/reference | 1.17983 | 0.2 |
39DAP/reference | 1.04081 | 0.771 |
41DAP/reference | 1.24918 | 0.079 |
42DAP/reference | 1.27151 | 0.026 |
43DAP/reference | 1.37537 | 0.014 |
47DAP/reference | 1.5156 | 0.001 |
52DAP/reference | 1.23906 | 0.031 |
57DAP/reference | 1.26727 | 0.079 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.6473 | 0.075 |
27DAP/17DAP | 1.84774 | 0.046 |
39DAP/27DAP | 0.76528 | 0.082 |
41DAP/39DAP | 0.69407 | 0.061 |
42DAP/41DAP | 1.08959 | 0.999 |
43DAP/42DAP | 1.0201 | 1 |
47DAP/43DAP | 1.03245 | 0.973 |
52DAP/47DAP | 1.06574 | 0.915 |
57DAP/52DAP | 0.94713 | 0.732 |
57DAP/7DAP | 0.60544 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.29445 | 0.045 |
17DAP/reference | 0.29851 | 0.011 |
27DAP/reference | 0.44322 | 0.01 |
39DAP/reference | 0.3348 | 0.011 |
41DAP/reference | 0.49726 | 0.025 |
42DAP/reference | 0.49688 | 0.019 |
43DAP/reference | 0.40315 | 0.01 |
47DAP/reference | 1.07652 | 0.671 |
52DAP/reference | 0.36432 | 0.009 |
57DAP/reference | 0.53979 | 0.022 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9743 | 0.669 |
17DAP/reference | 1.28413 | 0.056 |
27DAP/reference | 1.34558 | 0.063 |
39DAP/reference | 1.29652 | 0.043 |
41DAP/reference | 1.08159 | 0.587 |
42DAP/reference | 1.22332 | 0.096 |
43DAP/reference | 1.45064 | 0.035 |
47DAP/reference | 1.17189 | 0.043 |
52DAP/reference | 1.24 | 0.079 |
57DAP/reference | 1.02766 | 0.609 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.42691 | 0.034 |
17DAP/reference | 0.80535 | 0.286 |
27DAP/reference | 0.48808 | 0.023 |
39DAP/reference | 0.66844 | 0.043 |
41DAP/reference | 0.43847 | 0.019 |
42DAP/reference | 0.63945 | 0.071 |
43DAP/reference | 0.67401 | 0.137 |
47DAP/reference | 1.32507 | 0.06 |
52DAP/reference | 0.5064 | 0.055 |
57DAP/reference | 1.2873 | 0.648 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0197 | 1 |
26DAP/20DAP | 1.49538 | 0.102 |
34DAP/26DAP | 0.92816 | 0.879 |
51DAP/34DAP | 1.16077 | 0.719 |
52DAP/51DAP | 0.89818 | 1 |
53DAP/52DAP | 1.28617 | 0.296 |
55DAP/53DAP | 1.11565 | 1 |
57DAP/55DAP | 0.81991 | 0.496 |
62DAP/57DAP | 0.80007 | |
68DAP/62DAP | 1.00539 | 0.885 |
68DAP/14DAP | 2.05955 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.47762 | 0.02 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.49173 | 0.094 |
Mature Green Tomato/Ripe Tomato | 2.67264 | 0.015 |
Immature Eggplant/Mature Eggplant | 1.10405 | 0.288 |
Ripe Pepper/Ripe Tomato | 3.43918 | 1 |
Mature Eggplant/Ripe Tomato | 1.79069 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.19289 | 0.655 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.30642 | 0.572 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.76944 | |
IL12-4/WTpooled | 0.81171 | 0.71 |
IL1-4/WTpooled | 0.98243 | 1 |
WT/WTpooled | 0.62348 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.82716 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0246 | 0.921 |
DC3000/delta hrp 6h | 1.03531 | 0.978 |
DC3000/delta hrp 12h | 1.17028 | 1 |
DC3000/delta hrp 24h | 0.73972 | 0.036 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.44383 | 0.023 |
DC3000 delta B/DC3000 delta AB | 0.46478 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.92987 | 1 |
Exp 36h | 1.18036 | 1 |
Exp 60h | 1.10097 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98381 | 1 |
Var 0h | 0.82283 | 1 |
Var 12h I row2-row1 | 0.93075 | 0.565 |
Var 12h NI row2-row1 | 0.8721 | 0.627 |
Var 36h I row2-row1 | 1.30823 | 0.908 |
Var 36h NI row2-row1 | 1.37971 | 0.482 |
Var 60h I row2-row1 | 0.97343 | 0.952 |
Var 60h NI row2-row1 | 1.15524 | 0.904 |
Time course 0hI-0hNI | 0.95651 | 0.763 |
Time course 12hI-12hNI | 0.92315 | 0.341 |
Time course 36hI-36hNI | 0.70045 | 0.023 |
Time course 60hI-60hNI | 0.13909 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.04672 | 0.654 |
transgenic ySAMdc/azygous control (breaker) | 0.93578 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.94242 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.0472 | 0.13 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.27892 | 0.14 |
Manapal/WT (break) | 1.17782 | 0.381 |
Manapal/WT (red) | 1.43587 | 0.222 |
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