Expression of 1-1-6.2.5.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.018840.779
27DAP/17DAP0.962460.857
39DAP/27DAP0.92650.67
41DAP/39DAP1.142750.88
42DAP/41DAP1.165390.898
43DAP/42DAP0.874180.801
47DAP/43DAP0.981440.876
52DAP/47DAP0.907090.72
57DAP/52DAP0.90760.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.918580.14
17DAP/reference1.098430.653
27DAP/reference1.179830.2
39DAP/reference1.040810.771
41DAP/reference1.249180.079
42DAP/reference1.271510.026
43DAP/reference1.375370.014
47DAP/reference1.51560.001
52DAP/reference1.239060.031
57DAP/reference1.267270.079

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.64730.075
27DAP/17DAP1.847740.046
39DAP/27DAP0.765280.082
41DAP/39DAP0.694070.061
42DAP/41DAP1.089590.999
43DAP/42DAP1.02011
47DAP/43DAP1.032450.973
52DAP/47DAP1.065740.915
57DAP/52DAP0.947130.732
57DAP/7DAP0.605441

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.294450.045
17DAP/reference0.298510.011
27DAP/reference0.443220.01
39DAP/reference0.33480.011
41DAP/reference0.497260.025
42DAP/reference0.496880.019
43DAP/reference0.403150.01
47DAP/reference1.076520.671
52DAP/reference0.364320.009
57DAP/reference0.539790.022

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.97430.669
17DAP/reference1.284130.056
27DAP/reference1.345580.063
39DAP/reference1.296520.043
41DAP/reference1.081590.587
42DAP/reference1.223320.096
43DAP/reference1.450640.035
47DAP/reference1.171890.043
52DAP/reference1.240.079
57DAP/reference1.027660.609

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.426910.034
17DAP/reference0.805350.286
27DAP/reference0.488080.023
39DAP/reference0.668440.043
41DAP/reference0.438470.019
42DAP/reference0.639450.071
43DAP/reference0.674010.137
47DAP/reference1.325070.06
52DAP/reference0.50640.055
57DAP/reference1.28730.648

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.01971
26DAP/20DAP1.495380.102
34DAP/26DAP0.928160.879
51DAP/34DAP1.160770.719
52DAP/51DAP0.898181
53DAP/52DAP1.286170.296
55DAP/53DAP1.115651
57DAP/55DAP0.819910.496
62DAP/57DAP0.80007
68DAP/62DAP1.005390.885
68DAP/14DAP2.05955

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.477620.02

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.491730.094
Mature Green Tomato/Ripe Tomato2.672640.015
Immature Eggplant/Mature Eggplant1.104050.288
Ripe Pepper/Ripe Tomato3.439181
Mature Eggplant/Ripe Tomato1.790691

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M821.192890.655
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.306420.572
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.76944
IL12-4/WTpooled0.811710.71
IL1-4/WTpooled0.982431
WT/WTpooled0.623481

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.827160.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.02460.921
DC3000/delta hrp 6h1.035310.978
DC3000/delta hrp 12h1.170281
DC3000/delta hrp 24h0.739720.036

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.443830.023
DC3000 delta B/DC3000 delta AB0.464780.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.929871
Exp 36h1.180361
Exp 60h1.100971

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.983811
Var 0h0.822831
Var 12h I row2-row10.930750.565
Var 12h NI row2-row10.87210.627
Var 36h I row2-row11.308230.908
Var 36h NI row2-row11.379710.482
Var 60h I row2-row10.973430.952
Var 60h NI row2-row11.155240.904
Time course 0hI-0hNI0.956510.763
Time course 12hI-12hNI0.923150.341
Time course 36hI-36hNI0.700450.023
Time course 60hI-60hNI0.139090.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.046720.654
transgenic ySAMdc/azygous control (breaker)0.935780.49
transgenic ySAMdc/azygous control (red)0.942421

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.04720.13

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.278920.14
Manapal/WT (break)1.177820.381
Manapal/WT (red)1.435870.222