Expression of 1-1-6.2.6.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.35575 | 0.157 |
27DAP/17DAP | 2.15857 | 0.134 |
39DAP/27DAP | 1.42154 | 0.335 |
41DAP/39DAP | 0.99025 | 0.879 |
42DAP/41DAP | 1.37929 | 0.404 |
43DAP/42DAP | 0.92902 | 0.867 |
47DAP/43DAP | 0.79571 | 0.39 |
52DAP/47DAP | 0.80012 | 0.502 |
57DAP/52DAP | 1.37136 | 0.908 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94349 | 0.402 |
17DAP/reference | 1.08778 | 0.108 |
27DAP/reference | 1.00662 | 1 |
39DAP/reference | 1.25633 | 0.423 |
41DAP/reference | 1.0921 | 0.241 |
42DAP/reference | 0.87796 | 0.008 |
43DAP/reference | 1.06067 | 0.34 |
47DAP/reference | 0.86912 | 0.005 |
52DAP/reference | 0.75269 | 0.089 |
57DAP/reference | 0.75786 | 0.056 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.35995 | 0.048 |
27DAP/17DAP | 1.58504 | 0.035 |
39DAP/27DAP | 1.29804 | 0.259 |
41DAP/39DAP | 0.63631 | 0.035 |
42DAP/41DAP | 1.37752 | 0.003 |
43DAP/42DAP | 1.18736 | 0.23 |
47DAP/43DAP | 0.85653 | 0.134 |
52DAP/47DAP | 1.23699 | 0.366 |
57DAP/52DAP | 0.73383 | 0.055 |
57DAP/7DAP | 1.50347 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02865 | 1 |
17DAP/reference | 1.15368 | 0.199 |
27DAP/reference | 1.05448 | 0.453 |
39DAP/reference | 0.91306 | 0.146 |
41DAP/reference | 1 | 0.677 |
42DAP/reference | 1.05983 | 0.889 |
43DAP/reference | 1.0742 | 0.569 |
47DAP/reference | 1.12717 | 0.468 |
52DAP/reference | 1.15325 | 0.286 |
57DAP/reference | 1.08082 | 0.654 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97408 | 0.688 |
17DAP/reference | 0.91956 | 0.223 |
27DAP/reference | 0.85274 | 0.087 |
39DAP/reference | 0.90451 | 0.265 |
41DAP/reference | 0.79562 | 0.038 |
42DAP/reference | 0.85295 | 0.15 |
43DAP/reference | 1.21805 | 0.247 |
47DAP/reference | 0.96175 | 0.368 |
52DAP/reference | 0.99511 | 0.666 |
57DAP/reference | 1.09978 | 0.724 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84329 | 0.23 |
17DAP/reference | 1.05682 | 1 |
27DAP/reference | 0.9357 | 0.337 |
39DAP/reference | 0.94245 | 0.271 |
41DAP/reference | 0.89158 | 0.331 |
42DAP/reference | 0.87297 | 0.361 |
43DAP/reference | 0.85057 | 0.237 |
47DAP/reference | 0.99755 | 0.574 |
52DAP/reference | 1.05752 | 0.704 |
57DAP/reference | 0.59518 | 0.032 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.1413 | 0.966 |
26DAP/20DAP | 1.20916 | 0.421 |
34DAP/26DAP | 1.55005 | 0.19 |
51DAP/34DAP | 2.55139 | 0.029 |
52DAP/51DAP | 0.93165 | 1 |
53DAP/52DAP | 1.36467 | 0.221 |
55DAP/53DAP | 0.86082 | 0.252 |
57DAP/55DAP | 0.77228 | 0.391 |
62DAP/57DAP | 1.31379 | 0.723 |
68DAP/62DAP | 1.18257 | 0.897 |
68DAP/14DAP | 1.20363 | 0.487 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.34462 | 0.019 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.05197 | 0.898 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.75151 | 1 |
Mature Eggplant/Ripe Tomato | 0.54347 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.35954 | 0.877 |
1-1-2/M82 | 1.21585 | 0.972 |
12-2/M82 | 1.13782 | 1 |
12-4/M82 | 1.11094 | 1 |
1-3/M82 | 1.1209 | 1 |
2-1-1/M82 | 1.32358 | 0.209 |
2-1/M82 | 1.35391 | 1 |
2-6/M82 | 1.16078 | 0.329 |
3-2/M82 | 0.69679 | |
4-1-1/M82 | 0.96757 | 1 |
4-1/M82 | 0.98126 | 1 |
4-3-2/M82 | 0.97526 | 1 |
4-3/M82 | 1.8969 | 1 |
5-3/M82 | 1.20809 | 0.496 |
6-2/M82 | 1.31116 | 1 |
6-3/M82 | 0.98283 | 1 |
7-1/M82 | 1.07631 | 1 |
7-2/M82 | 0.97669 | 1 |
9-3-2/M82 | 1.38958 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.50696 | |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.26052 | 1 |
IL12-4/WTpooled | 0.67825 | 0.484 |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | 0.92031 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.96767 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.1091 | 0.875 |
DC3000/delta hrp 6h | 1.1056 | 1 |
DC3000/delta hrp 12h | 1.07742 | 1 |
DC3000/delta hrp 24h | 0.77645 | 0.08 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.43017 | 0.556 |
DC3000 delta B/DC3000 delta AB | 1.04222 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.96784 | 1 |
Exp 36h | 1.47068 | 1 |
Exp 60h | 0.81277 | 0.664 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00239 | 1 |
Var 0h | 0.98661 | 1 |
Var 12h I row2-row1 | 1.0706 | 0.506 |
Var 12h NI row2-row1 | 0.98637 | 1 |
Var 36h I row2-row1 | 1.25819 | 1 |
Var 36h NI row2-row1 | 1.29012 | 1 |
Var 60h I row2-row1 | 0.78746 | 0.285 |
Var 60h NI row2-row1 | 1.3011 | 0.904 |
Time course 0hI-0hNI | 1.09854 | 0.719 |
Time course 12hI-12hNI | 0.95418 | 0.687 |
Time course 36hI-36hNI | 0.96041 | 0.468 |
Time course 60hI-60hNI | 0.82241 | 0.081 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.09845 | 0.297 |
transgenic ySAMdc/azygous control (breaker) | 0.88648 | 0.251 |
transgenic ySAMdc/azygous control (red) | 0.86546 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02147 | 0.301 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.92856 | 0.35 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.85056 | 0.172 |
Manapal/WT (break) | 1.03767 | 1 |
Manapal/WT (red) | 1.00012 | 1 |
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