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Expression of 1-1-6.2.6.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.355750.157
27DAP/17DAP2.158570.134
39DAP/27DAP1.421540.335
41DAP/39DAP0.990250.879
42DAP/41DAP1.379290.404
43DAP/42DAP0.929020.867
47DAP/43DAP0.795710.39
52DAP/47DAP0.800120.502
57DAP/52DAP1.371360.908

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.943490.402
17DAP/reference1.087780.108
27DAP/reference1.006621
39DAP/reference1.256330.423
41DAP/reference1.09210.241
42DAP/reference0.877960.008
43DAP/reference1.060670.34
47DAP/reference0.869120.005
52DAP/reference0.752690.089
57DAP/reference0.757860.056

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.359950.048
27DAP/17DAP1.585040.035
39DAP/27DAP1.298040.259
41DAP/39DAP0.636310.035
42DAP/41DAP1.377520.003
43DAP/42DAP1.187360.23
47DAP/43DAP0.856530.134
52DAP/47DAP1.236990.366
57DAP/52DAP0.733830.055
57DAP/7DAP1.503470.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.028651
17DAP/reference1.153680.199
27DAP/reference1.054480.453
39DAP/reference0.913060.146
41DAP/reference10.677
42DAP/reference1.059830.889
43DAP/reference1.07420.569
47DAP/reference1.127170.468
52DAP/reference1.153250.286
57DAP/reference1.080820.654

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.974080.688
17DAP/reference0.919560.223
27DAP/reference0.852740.087
39DAP/reference0.904510.265
41DAP/reference0.795620.038
42DAP/reference0.852950.15
43DAP/reference1.218050.247
47DAP/reference0.961750.368
52DAP/reference0.995110.666
57DAP/reference1.099780.724

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.843290.23
17DAP/reference1.056821
27DAP/reference0.93570.337
39DAP/reference0.942450.271
41DAP/reference0.891580.331
42DAP/reference0.872970.361
43DAP/reference0.850570.237
47DAP/reference0.997550.574
52DAP/reference1.057520.704
57DAP/reference0.595180.032

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.14130.966
26DAP/20DAP1.209160.421
34DAP/26DAP1.550050.19
51DAP/34DAP2.551390.029
52DAP/51DAP0.931651
53DAP/52DAP1.364670.221
55DAP/53DAP0.860820.252
57DAP/55DAP0.772280.391
62DAP/57DAP1.313790.723
68DAP/62DAP1.182570.897
68DAP/14DAP1.203630.487

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.344620.019

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.051970.898
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.751511
Mature Eggplant/Ripe Tomato0.543471

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.359540.877
1-1-2/M821.215850.972
12-2/M821.137821
12-4/M821.110941
1-3/M821.12091
2-1-1/M821.323580.209
2-1/M821.353911
2-6/M821.160780.329
3-2/M820.69679N/A
4-1-1/M820.967571
4-1/M820.981261
4-3-2/M820.975261
4-3/M821.89691
5-3/M821.208090.496
6-2/M821.311161
6-3/M820.982831
7-1/M821.076311
7-2/M820.976691
9-3-2/M821.389581

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.50696N/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.260521
IL12-4/WTpooled0.678250.484
IL1-4/WTpooledN/AN/A
WT/WTpooled0.920311

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.967671

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.10910.875
DC3000/delta hrp 6h1.10561
DC3000/delta hrp 12h1.077421
DC3000/delta hrp 24h0.776450.08

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.430170.556
DC3000 delta B/DC3000 delta AB1.04222N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.967841
Exp 36h1.470681
Exp 60h0.812770.664

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.002391
Var 0h0.986611
Var 12h I row2-row11.07060.506
Var 12h NI row2-row10.986371
Var 36h I row2-row11.258191
Var 36h NI row2-row11.290121
Var 60h I row2-row10.787460.285
Var 60h NI row2-row11.30110.904
Time course 0hI-0hNI1.098540.719
Time course 12hI-12hNI0.954180.687
Time course 36hI-36hNI0.960410.468
Time course 60hI-60hNI0.822410.081

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.098450.297
transgenic ySAMdc/azygous control (breaker)0.886480.251
transgenic ySAMdc/azygous control (red)0.865461

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.021470.301

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.928560.35

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.850560.172
Manapal/WT (break)1.037671
Manapal/WT (red)1.000121