Expression of 1-1-6.2.9.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.16318 | 0.463 |
27DAP/17DAP | 1.11227 | 0.854 |
39DAP/27DAP | 1.19817 | 0.658 |
41DAP/39DAP | 1.19012 | 0.797 |
42DAP/41DAP | 1.05497 | 0.938 |
43DAP/42DAP | 1.1041 | 0.974 |
47DAP/43DAP | 1.23437 | 0.842 |
52DAP/47DAP | 0.88013 | 0.637 |
57DAP/52DAP | 1.00321 | 0.966 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02447 | 0.814 |
17DAP/reference | 0.96874 | 0.368 |
27DAP/reference | 0.97558 | 0.471 |
39DAP/reference | 1.07238 | 0.262 |
41DAP/reference | 0.99831 | 1 |
42DAP/reference | 1.03892 | 0.166 |
43DAP/reference | 1.02616 | 0.678 |
47DAP/reference | 1.05561 | 0.105 |
52DAP/reference | 1.04125 | 0.302 |
57DAP/reference | 1.06257 | 0.321 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03879 | 0.525 |
27DAP/17DAP | 0.99727 | 0.969 |
39DAP/27DAP | 0.99163 | 0.997 |
41DAP/39DAP | 0.94225 | 0.861 |
42DAP/41DAP | 0.99821 | 0.899 |
43DAP/42DAP | 1.01499 | 0.627 |
47DAP/43DAP | 1.00223 | 0.973 |
52DAP/47DAP | 0.96297 | 0.801 |
57DAP/52DAP | 1.00414 | 1 |
57DAP/7DAP | 0.94265 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19395 | 0.197 |
17DAP/reference | 1.19929 | 0.269 |
27DAP/reference | 1.32752 | 0.107 |
39DAP/reference | 1.22412 | 0.314 |
41DAP/reference | 1.38554 | 0.024 |
42DAP/reference | 1.31802 | 0.021 |
43DAP/reference | 1.40012 | 0.009 |
47DAP/reference | 1.26762 | 0.549 |
52DAP/reference | 1.3265 | 0.113 |
57DAP/reference | 1.33131 | 0.005 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05716 | 0.443 |
17DAP/reference | 1.0495 | 0.448 |
27DAP/reference | 1.03819 | 0.639 |
39DAP/reference | 0.97758 | 0.25 |
41DAP/reference | 0.96355 | 0.237 |
42DAP/reference | 0.97402 | 0.289 |
43DAP/reference | 1.06148 | 0.769 |
47DAP/reference | 0.99032 | 0.625 |
52DAP/reference | 1.00188 | 0.761 |
57DAP/reference | 0.99945 | 0.916 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.4305 | 0.025 |
17DAP/reference | 1.17454 | 0.443 |
27DAP/reference | 1.28116 | 0.062 |
39DAP/reference | 1.26404 | 0.009 |
41DAP/reference | 0.99702 | 0.754 |
42DAP/reference | 1.14076 | 0.51 |
43DAP/reference | 1.07546 | 0.608 |
47DAP/reference | 0.94968 | 0.296 |
52DAP/reference | 1.1512 | 0.526 |
57DAP/reference | 0.96614 | 0.475 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.03274 | 0.966 |
26DAP/20DAP | 1.00249 | 1 |
34DAP/26DAP | 1.01241 | 1 |
51DAP/34DAP | 1.02645 | 0.759 |
52DAP/51DAP | 0.99438 | 1 |
53DAP/52DAP | 1.05894 | 0.806 |
55DAP/53DAP | 1.06233 | 0.712 |
57DAP/55DAP | 0.95901 | 0.804 |
62DAP/57DAP | 1.21752 | 0.723 |
68DAP/62DAP | 1.24961 | 0.515 |
68DAP/14DAP | 1.08939 | 0.594 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.04851 | 0.663 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.98991 | 0.417 |
Mature Green Tomato/Ripe Tomato | 1.16657 | 0.632 |
Immature Eggplant/Mature Eggplant | 1.24251 | 0.222 |
Ripe Pepper/Ripe Tomato | 0.25582 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.24606 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.93705 | 0.944 |
1-1-2/M82 | 0.97033 | 1 |
12-2/M82 | 0.92271 | 0.955 |
12-4/M82 | 0.9444 | 0.619 |
1-3/M82 | 1.00348 | 1 |
2-1-1/M82 | 0.92517 | 0.784 |
2-1/M82 | 1.01604 | 1 |
2-6/M82 | 0.97067 | 1 |
3-2/M82 | 0.99226 | 1 |
4-1-1/M82 | 0.99919 | 1 |
4-1/M82 | 1.25456 | 0.853 |
4-3-2/M82 | 0.95088 | 0.698 |
4-3/M82 | 0.94091 | 0.72 |
5-3/M82 | 0.9786 | 1 |
6-2/M82 | 1.00266 | 1 |
6-3/M82 | 0.99248 | 1 |
7-1/M82 | 1.04922 | 0.598 |
7-2/M82 | 0.94002 | 0.796 |
9-3-2/M82 | 0.95439 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.65419 | 0.277 |
IL2-6/WTpooled | 0.99898 | 1 |
IL7-5/WTpooled | 0.76454 | 0.559 |
IL7-3/WTpooled | 0.76279 | 1 |
IL12-4/WTpooled | 0.94016 | 0.566 |
IL1-4/WTpooled | 1.16442 | 1 |
WT/WTpooled | 1.03952 | 0.874 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.93041 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02266 | 0.921 |
DC3000/delta hrp 6h | 1.27588 | 1 |
DC3000/delta hrp 12h | 1.01409 | 1 |
DC3000/delta hrp 24h | 1.04716 | 0.604 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.13894 | 0.073 |
DC3000 delta B/DC3000 delta AB | 1.12082 | 0.274 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.13788 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02224 | 1 |
Var 0h | 0.78266 | 0.782 |
Var 12h I row2-row1 | 1.49027 | 0.272 |
Var 12h NI row2-row1 | 1.09042 | 1 |
Var 36h I row2-row1 | 1.03977 | 1 |
Var 36h NI row2-row1 | 0.87104 | 0.549 |
Var 60h I row2-row1 | 1.06395 | 1 |
Var 60h NI row2-row1 | 1.08451 | 0.904 |
Time course 0hI-0hNI | 1.0475 | 0.867 |
Time course 12hI-12hNI | 1.06359 | 0.743 |
Time course 36hI-36hNI | 1.02219 | 0.799 |
Time course 60hI-60hNI | 1.43628 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.92269 | 0.454 |
transgenic ySAMdc/azygous control (breaker) | 1.12607 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.08186 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.95994 | 0.058 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.10355 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.72101 | 0.172 |
Manapal/WT (break) | 0.77259 | 1 |
Manapal/WT (red) | 1.05275 | 1 |
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