TFGD
Home Expression Metabolite sRNA Links Contact

Expression of 1-1-6.2.9.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.163180.463
27DAP/17DAP1.112270.854
39DAP/27DAP1.198170.658
41DAP/39DAP1.190120.797
42DAP/41DAP1.054970.938
43DAP/42DAP1.10410.974
47DAP/43DAP1.234370.842
52DAP/47DAP0.880130.637
57DAP/52DAP1.003210.966

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.024470.814
17DAP/reference0.968740.368
27DAP/reference0.975580.471
39DAP/reference1.072380.262
41DAP/reference0.998311
42DAP/reference1.038920.166
43DAP/reference1.026160.678
47DAP/reference1.055610.105
52DAP/reference1.041250.302
57DAP/reference1.062570.321

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.038790.525
27DAP/17DAP0.997270.969
39DAP/27DAP0.991630.997
41DAP/39DAP0.942250.861
42DAP/41DAP0.998210.899
43DAP/42DAP1.014990.627
47DAP/43DAP1.002230.973
52DAP/47DAP0.962970.801
57DAP/52DAP1.004141
57DAP/7DAP0.942651

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.193950.197
17DAP/reference1.199290.269
27DAP/reference1.327520.107
39DAP/reference1.224120.314
41DAP/reference1.385540.024
42DAP/reference1.318020.021
43DAP/reference1.400120.009
47DAP/reference1.267620.549
52DAP/reference1.32650.113
57DAP/reference1.331310.005

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.057160.443
17DAP/reference1.04950.448
27DAP/reference1.038190.639
39DAP/reference0.977580.25
41DAP/reference0.963550.237
42DAP/reference0.974020.289
43DAP/reference1.061480.769
47DAP/reference0.990320.625
52DAP/reference1.001880.761
57DAP/reference0.999450.916

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.43050.025
17DAP/reference1.174540.443
27DAP/reference1.281160.062
39DAP/reference1.264040.009
41DAP/reference0.997020.754
42DAP/reference1.140760.51
43DAP/reference1.075460.608
47DAP/reference0.949680.296
52DAP/reference1.15120.526
57DAP/reference0.966140.475

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.032740.966
26DAP/20DAP1.002491
34DAP/26DAP1.012411
51DAP/34DAP1.026450.759
52DAP/51DAP0.994381
53DAP/52DAP1.058940.806
55DAP/53DAP1.062330.712
57DAP/55DAP0.959010.804
62DAP/57DAP1.217520.723
68DAP/62DAP1.249610.515
68DAP/14DAP1.089390.594

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.048510.663

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.989910.417
Mature Green Tomato/Ripe Tomato1.166570.632
Immature Eggplant/Mature Eggplant1.242510.222
Ripe Pepper/Ripe Tomato0.255820.293
Mature Eggplant/Ripe Tomato0.246060.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.937050.944
1-1-2/M820.970331
12-2/M820.922710.955
12-4/M820.94440.619
1-3/M821.003481
2-1-1/M820.925170.784
2-1/M821.016041
2-6/M820.970671
3-2/M820.992261
4-1-1/M820.999191
4-1/M821.254560.853
4-3-2/M820.950880.698
4-3/M820.940910.72
5-3/M820.97861
6-2/M821.002661
6-3/M820.992481
7-1/M821.049220.598
7-2/M820.940020.796
9-3-2/M820.954391

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.654190.277
IL2-6/WTpooled0.998981
IL7-5/WTpooled0.764540.559
IL7-3/WTpooled0.762791
IL12-4/WTpooled0.940160.566
IL1-4/WTpooled1.164421
WT/WTpooled1.039520.874

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.930410.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.022660.921
DC3000/delta hrp 6h1.275881
DC3000/delta hrp 12h1.014091
DC3000/delta hrp 24h1.047160.604

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.138940.073
DC3000 delta B/DC3000 delta AB1.120820.274

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.137881
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.022241
Var 0h0.782660.782
Var 12h I row2-row11.490270.272
Var 12h NI row2-row11.090421
Var 36h I row2-row11.039771
Var 36h NI row2-row10.871040.549
Var 60h I row2-row11.063951
Var 60h NI row2-row11.084510.904
Time course 0hI-0hNI1.04750.867
Time course 12hI-12hNI1.063590.743
Time course 36hI-36hNI1.022190.799
Time course 60hI-60hNI1.436280.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.922690.454
transgenic ySAMdc/azygous control (breaker)1.126070.248
transgenic ySAMdc/azygous control (red)1.081860.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.959940.058

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.103551

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.721010.172
Manapal/WT (break)0.772591
Manapal/WT (red)1.052751