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Expression of 1-1-6.2.9.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.758820.162
27DAP/17DAP0.945120.857
39DAP/27DAP1.539850.091
41DAP/39DAP0.59960.045
42DAP/41DAP1.135820.873
43DAP/42DAP1.000860.937
47DAP/43DAP0.884040.618
52DAP/47DAP1.138760.767
57DAP/52DAP1.320080.524

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.596380.008
17DAP/reference1.312460.185
27DAP/reference0.750950.022
39DAP/reference0.970810.638
41DAP/reference0.994950.814
42DAP/reference1.44750.001
43DAP/reference1.367350.008
47DAP/reference1.077090.509
52DAP/reference0.870420.115
57DAP/reference1.081610.392

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.131510.312
27DAP/17DAP0.909260.508
39DAP/27DAP0.859440.207
41DAP/39DAP1.068140.861
42DAP/41DAP1.070160.879
43DAP/42DAP1.053580.273
47DAP/43DAP1.050030.857
52DAP/47DAP0.8520.164
57DAP/52DAP1.077570.695
57DAP/7DAP0.744171

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.939820.024
17DAP/reference1.585280.013
27DAP/reference1.342660.01
39DAP/reference1.511640.006
41DAP/reference1.208440.034
42DAP/reference1.067330.686
43DAP/reference1.14770.273
47DAP/reference1.49490.047
52DAP/reference1.431960.043
57DAP/reference1.631390.014

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.572890.053
17DAP/reference1.51790.007
27DAP/reference1.401410.048
39DAP/reference1.376010.013
41DAP/reference1.284670.023
42DAP/reference1.318890.047
43DAP/reference1.143350.874
47DAP/reference1.602690.01
52DAP/reference0.966730.407
57DAP/reference1.219530.437

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.924720.016
17DAP/reference1.304310.168
27DAP/reference1.30470.02
39DAP/reference1.475520.004
41DAP/reference1.283350.026
42DAP/reference1.210180.321
43DAP/reference1.483520.008
47DAP/reference1.232480.035
52DAP/reference1.631270.048
57DAP/reference1.101490.25

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.958681
26DAP/20DAP1.495220.394
34DAP/26DAP0.993451
51DAP/34DAP1.018260.946
52DAP/51DAP0.759710.151
53DAP/52DAP0.94890.807
55DAP/53DAP0.706260.053
57DAP/55DAP1.148110.779
62DAP/57DAP0.842450.162
68DAP/62DAP0.912690.722
68DAP/14DAP0.82591

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.322140.028

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.158390.063
Mature Green Tomato/Ripe Tomato1.30033N/A
Immature Eggplant/Mature Eggplant0.87640.366
Ripe Pepper/Ripe Tomato1.369941
Mature Eggplant/Ripe Tomato1.265881

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.96190.961
1-1-2/M821.162121
12-2/M820.816050.955
12-4/M820.963840.619
1-3/M822.204070.26
2-1-1/M820.871590.784
2-1/M820.798630.325
2-6/M820.922631
3-2/M820.946380.455
4-1-1/M820.885971
4-1/M820.978551
4-3-2/M821.45160.241
4-3/M821.375131
5-3/M821.412880.427
6-2/M821.015871
6-3/M821.162841
7-1/M820.899790.509
7-2/M821.275580.302
9-3-2/M821.294211

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.333870.584
IL7-5/WTpooled1.36459N/A
IL7-3/WTpooled1.044391
IL12-4/WTpooled1.112940.673
IL1-4/WTpooled1.291921
WT/WTpooled0.912881

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.979391

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.041
DC3000/delta hrp 6h1.019271
DC3000/delta hrp 12h0.965611
DC3000/delta hrp 24h1.175950.438

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.204280.102
DC3000 delta B/DC3000 delta AB1.250530.19

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.829971
Exp 36h1.294771
Exp 60h1.008061

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.03071
Var 0h1.009261
Var 12h I row2-row10.948560.856
Var 12h NI row2-row11.144811
Var 36h I row2-row10.994971
Var 36h NI row2-row10.775340.478
Var 60h I row2-row10.957930.952
Var 60h NI row2-row10.809120.301
Time course 0hI-0hNI0.861550.086
Time course 12hI-12hNI1.164870.066
Time course 36hI-36hNI1.42990.028
Time course 60hI-60hNI1.743780.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.946330.567
transgenic ySAMdc/azygous control (breaker)1.075721
transgenic ySAMdc/azygous control (red)1.209830.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.335060.042

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.184141

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.986611
Manapal/WT (break)1.166111
Manapal/WT (red)1.322190.413