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Expression of 1-1-6.3.19.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.82490.253
27DAP/17DAP1.837350.402
39DAP/27DAP1.583550.927
41DAP/39DAP1.129470.822
42DAP/41DAP0.975791
43DAP/42DAP1.17281
47DAP/43DAP1.350080.618
52DAP/47DAP1.371530.534
57DAP/52DAP1.487950.963

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.873550.05
17DAP/reference1.083820.059
27DAP/reference1.119060.216
39DAP/reference1.120950.119
41DAP/reference1.082860.516
42DAP/reference0.993260.531
43DAP/reference1.033520.678
47DAP/reference1.036420.794
52DAP/reference0.987580.58
57DAP/reference1.028960.853

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.888090.363
27DAP/17DAP0.973480.887
39DAP/27DAP0.909740.622
41DAP/39DAP1.059370.887
42DAP/41DAP1.093140.446
43DAP/42DAP0.982730.875
47DAP/43DAP1.124840.788
52DAP/47DAP0.951170.884
57DAP/52DAP1.031080.902
57DAP/7DAP1.290831

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.934370.246
17DAP/reference0.859020.056
27DAP/reference1.050150.804
39DAP/reference0.883280.049
41DAP/reference0.865510.098
42DAP/reference1.035170.791
43DAP/reference0.892350.11
47DAP/reference0.860650.101
52DAP/reference0.871280.035
57DAP/reference0.820550.132

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.27430.146
17DAP/reference1.151980.375
27DAP/reference0.852840.155
39DAP/reference0.984810.539
41DAP/reference0.865780.089
42DAP/reference0.81640.032
43DAP/reference1.253230.14
47DAP/reference0.900790.077
52DAP/reference1.034640.747
57DAP/reference1.065230.737

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.895360.112
17DAP/reference0.932350.433
27DAP/reference1.059360.487
39DAP/reference0.995130.755
41DAP/reference0.976030.618
42DAP/reference0.860810.071
43DAP/reference0.847870.04
47DAP/reference0.980490.538
52DAP/reference0.865970.189
57DAP/reference0.673560.019

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.320060.966
26DAP/20DAP1.589570.278
34DAP/26DAP1.043271
51DAP/34DAP1.245350.207
52DAP/51DAP0.969481
53DAP/52DAP0.698270.124
55DAP/53DAP0.999040.939
57DAP/55DAP1.0231
62DAP/57DAP1.076490.935
68DAP/62DAP0.902480.579
68DAP/14DAP1.056681

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.431390.172

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.952730.745
Mature Green Tomato/Ripe Tomato0.828150.377
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.63216N/A
Mature Eggplant/Ripe Tomato0.597160.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.0660.877
1-1-2/M821.139831
12-2/M821.03713N/A
12-4/M821.001271
1-3/M821.00627N/A
2-1-1/M821.024161
2-1/M820.850660.519
2-6/M821.09661
3-2/M820.99252N/A
4-1-1/M820.96811
4-1/M821.31283N/A
4-3-2/M82N/AN/A
4-3/M821.050091
5-3/M821.155511
6-2/M82N/AN/A
6-3/M821.061741
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.82934N/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.195290.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.129090.921
DC3000/delta hrp 6h1.015331
DC3000/delta hrp 12h1.077411
DC3000/delta hrp 24h0.965690.831

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.404941
Exp 60h1.027361

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.978831
Var 0h1.561050.782
Var 12h I row2-row11.289570.283
Var 12h NI row2-row11.093921
Var 36h I row2-row10.7988N/A
Var 36h NI row2-row10.718031
Var 60h I row2-row10.951790.582
Var 60h NI row2-row10.93370.292
Time course 0hI-0hNI0.882810.418
Time course 12hI-12hNI1.295730.287
Time course 36hI-36hNI1.221340.101
Time course 60hI-60hNI1.225440.302

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.974850.662
transgenic ySAMdc/azygous control (breaker)1.014331
transgenic ySAMdc/azygous control (red)0.992311

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.009450.587

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.184470.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.91161
Manapal/WT (red)0.658410.181