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Expression of 1-1-6.3.19.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.245880.534
27DAP/17DAP1.503130.413
39DAP/27DAP1.352190.752
41DAP/39DAP1.023390.922
42DAP/41DAP1.140050.938
43DAP/42DAP1.105150.94
47DAP/43DAP1.041810.95
52DAP/47DAP0.852650.612
57DAP/52DAP1.301810.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.392270.013
17DAP/reference1.357510.02
27DAP/reference1.262970.093
39DAP/reference1.259890.082
41DAP/reference1.645240.014
42DAP/reference1.467670.001
43DAP/reference1.038950.866
47DAP/reference1.330850.001
52DAP/reference1.594120.008
57DAP/reference1.092590.762

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.231420.372
27DAP/17DAP0.950140.782
39DAP/27DAP1.281540.108
41DAP/39DAP0.897980.586
42DAP/41DAP1.090630.55
43DAP/42DAP1.039580.513
47DAP/43DAP1.047850.93
52DAP/47DAP0.985530.925
57DAP/52DAP0.966830.716
57DAP/7DAP1.199431

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.908340.138
17DAP/reference0.858880.035
27DAP/reference0.815540.01
39DAP/reference0.913090.109
41DAP/reference0.955410.284
42DAP/reference0.958650.095
43DAP/reference1.043530.511
47DAP/reference1.070660.685
52DAP/reference0.91370.232
57DAP/reference0.795040.022

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.383450.108
17DAP/reference1.652970.02
27DAP/reference1.492380.018
39DAP/reference1.576380.011
41DAP/reference1.677580.005
42DAP/reference1.514750.008
43DAP/reference1.41850.152
47DAP/reference1.392210.008
52DAP/reference1.776460.006
57DAP/reference1.669930.008

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.938360.455
17DAP/reference1.017791
27DAP/reference0.845880.038
39DAP/reference0.815330.025
41DAP/reference0.894320.07
42DAP/reference0.897340.361
43DAP/reference1.003130.712
47DAP/reference1.306390.12
52DAP/reference0.861840.368
57DAP/reference0.806280.104

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.964881
26DAP/20DAP0.88261
34DAP/26DAP1.040911
51DAP/34DAP1.15190.677
52DAP/51DAP1.063160.708
53DAP/52DAP0.798240.301
55DAP/53DAP1.124060.948
57DAP/55DAP1.120650.728
62DAP/57DAP0.97560.871
68DAP/62DAP0.764190.406
68DAP/14DAP0.728151

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.390590.068

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.019180.835
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.074650.224
Mature Eggplant/Ripe Tomato0.058590.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.215360.574
1-1-2/M820.960781
12-2/M821.046421
12-4/M821.137111
1-3/M821.326520.479
2-1-1/M821.113320.689
2-1/M821.229411
2-6/M820.971341
3-2/M820.98291
4-1-1/M820.904491
4-1/M820.948491
4-3-2/M820.782360.487
4-3/M820.907690.72
5-3/M821.021681
6-2/M821.217191
6-3/M820.957791
7-1/M820.901780.803
7-2/M820.985891
9-3-2/M820.909391

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.18369N/A
IL2-6/WTpooled0.847970.358
IL7-5/WTpooled1.13239N/A
IL7-3/WTpooled2.014611
IL12-4/WTpooled1.363770.516
IL1-4/WTpooled0.954691
WT/WTpooled0.859251

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.295730.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.068890.921
DC3000/delta hrp 6h0.515010.942
DC3000/delta hrp 12h1.078091
DC3000/delta hrp 24h1.002481

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.153430.384
DC3000 delta B/DC3000 delta AB0.945540.657

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.825471
Exp 36h1.57140.489
Exp 60h1.623870.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.95441
Var 0h0.927971
Var 12h I row2-row11.127630.613
Var 12h NI row2-row11.173250.34
Var 36h I row2-row11.070381
Var 36h NI row2-row11.513151
Var 60h I row2-row10.995221
Var 60h NI row2-row10.809830.298
Time course 0hI-0hNI1.033060.799
Time course 12hI-12hNI1.09510.452
Time course 36hI-36hNI1.350240.006
Time course 60hI-60hNI1.975480.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.897390.485
transgenic ySAMdc/azygous control (breaker)0.850230.49
transgenic ySAMdc/azygous control (red)0.852051

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.82780.049

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.244911

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.025071
Manapal/WT (red)0.999961