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Expression of 1-1-6.3.2.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.201770.838
27DAP/17DAP1.082150.859
39DAP/27DAP0.913240.663
41DAP/39DAP0.782210.288
42DAP/41DAP1.184630.908
43DAP/42DAP1.130171
47DAP/43DAP0.935380.71
52DAP/47DAP1.049250.918
57DAP/52DAP1.120981

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.005191
17DAP/reference1.000061
27DAP/reference1.009030.966
39DAP/reference0.995660.957
41DAP/reference0.886060.008
42DAP/reference0.804950.095
43DAP/reference0.783280.017
47DAP/reference1.03110.885
52DAP/reference0.8270.065
57DAP/reference0.965850.553

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.784490.251
27DAP/17DAP0.843640.508
39DAP/27DAP0.931790.563
41DAP/39DAP1.107960.883
42DAP/41DAP1.131570.999
43DAP/42DAP1.061730.746
47DAP/43DAP1.061260.892
52DAP/47DAP1.083250.749
57DAP/52DAP0.977230.776
57DAP/7DAP1.071421

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.093190.385
17DAP/reference1.130620.477
27DAP/reference0.84760.055
39DAP/reference1.235360.21
41DAP/reference1.188740.445
42DAP/reference1.194310.308
43DAP/reference1.424520.01
47DAP/reference0.853260.04
52DAP/reference1.28980.086
57DAP/reference1.112790.5

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.962760.623
17DAP/reference1.069310.32
27DAP/reference0.946060.381
39DAP/reference0.795880.015
41DAP/reference0.927520.226
42DAP/reference0.874540.067
43DAP/reference1.384770.23
47DAP/reference0.974110.41
52DAP/reference0.871290.143
57DAP/reference0.905650.144

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.172280.251
17DAP/reference1.062770.72
27DAP/reference0.996240.843
39DAP/reference1.005451
41DAP/reference1.020661
42DAP/reference1.012470.816
43DAP/reference0.999350.639
47DAP/reference0.885140.109
52DAP/reference1.014070.965
57DAP/reference0.898430.127

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.421720.786
26DAP/20DAP0.866751
34DAP/26DAP0.910990.97
51DAP/34DAP0.9550.799
52DAP/51DAP0.938931
53DAP/52DAP1.205780.797
55DAP/53DAP1.198780.046
57DAP/55DAP1.232980.584
62DAP/57DAP0.884070.466
68DAP/62DAP0.960150.81
68DAP/14DAP0.736880.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.108220.696

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.04461
Mature Green Tomato/Ripe Tomato0.588370.036
Immature Eggplant/Mature Eggplant1.259790.311
Ripe Pepper/Ripe Tomato0.952141
Mature Eggplant/Ripe Tomato0.73046N/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.979111
1-1-2/M821.20471
12-2/M821.291121
12-4/M820.959530.619
1-3/M821.040681
2-1-1/M820.887751
2-1/M821.22815N/A
2-6/M821.029961
3-2/M820.81979N/A
4-1-1/M820.904791
4-1/M821.11191N/A
4-3-2/M821.39518N/A
4-3/M821.059781
5-3/M820.945151
6-2/M820.716751
6-3/M820.872191
7-1/M820.80857N/A
7-2/M820.846760.796
9-3-2/M821.28164N/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.088991
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.298010.792
IL7-3/WTpooled0.766291
IL12-4/WTpooled1.032550.646
IL1-4/WTpooled1.037311
WT/WTpooled1.13021

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.248220.309

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.124840.894
DC3000/delta hrp 6h1.062581
DC3000/delta hrp 12h0.938971
DC3000/delta hrp 24h1.064010.582

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.944021
Exp 36h0.958090.879
Exp 60h0.870850.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.996481
Var 0h1.149530.936
Var 12h I row2-row11.037970.654
Var 12h NI row2-row10.863970.906
Var 36h I row2-row11.099660.305
Var 36h NI row2-row10.983150.852
Var 60h I row2-row10.977N/A
Var 60h NI row2-row10.914580.69
Time course 0hI-0hNI1.062640.852
Time course 12hI-12hNI1.11390.36
Time course 36hI-36hNI1.68450.005
Time course 60hI-60hNI2.036560.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.982330.789
transgenic ySAMdc/azygous control (breaker)1.082391
transgenic ySAMdc/azygous control (red)0.980121

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.069410.119

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.074080.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.404980.09
Manapal/WT (break)1.252250.381
Manapal/WT (red)1.091211