TFGD
Home Expression Metabolite sRNA Links Contact

Expression of 1-1-6.3.6.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.28130.205
27DAP/17DAP1.033090.905
39DAP/27DAP1.385240.215
41DAP/39DAP0.814570.424
42DAP/41DAP1.164310.954
43DAP/42DAP1.468270.279
47DAP/43DAP1.129480.633
52DAP/47DAP0.845610.593
57DAP/52DAP1.02860.971

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.493040.012
17DAP/reference1.384750.112
27DAP/reference1.336340.156
39DAP/reference1.601220.038
41DAP/reference1.182490.102
42DAP/reference1.299980.002
43DAP/reference1.108850.325
47DAP/reference0.945360.224
52DAP/reference0.764350.044
57DAP/reference0.977680.503

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.672850.138
27DAP/17DAP1.112571
39DAP/27DAP0.894820.54
41DAP/39DAP1.110.719
42DAP/41DAP0.877870.402
43DAP/42DAP0.980720.729
47DAP/43DAP0.862330.357
52DAP/47DAP0.988480.905
57DAP/52DAP1.570040.073
57DAP/7DAP1.068891

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.03411
17DAP/reference1.047321
27DAP/reference1.174030.018
39DAP/reference1.32260.04
41DAP/reference1.331510.03
42DAP/reference1.260910.132
43DAP/reference1.064670.537
47DAP/reference1.106390.279
52DAP/reference1.155850.266
57DAP/reference1.08420.698

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.059110.732
17DAP/reference1.558960.007
27DAP/reference1.287950.123
39DAP/reference1.243770.119
41DAP/reference1.354430.031
42DAP/reference1.142740.121
43DAP/reference0.865420.229
47DAP/reference1.078460.712
52DAP/reference0.988930.576
57DAP/reference0.744960.01

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.143480.505
17DAP/reference1.31950.545
27DAP/reference0.917480.397
39DAP/reference1.183150.211
41DAP/reference1.035460.939
42DAP/reference0.986370.816
43DAP/reference1.333280.07
47DAP/reference1.336080.029
52DAP/reference1.045990.99
57DAP/reference1.428390.081

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.371010.966
26DAP/20DAPN/AN/A
34DAP/26DAP3.36322N/A
51DAP/34DAP1.69817N/A
52DAP/51DAP1.024740.792
53DAP/52DAP1.126370.96
55DAP/53DAP1.340040.387
57DAP/55DAP0.438580.017
62DAP/57DAP1.10381
68DAP/62DAP1.207480.792
68DAP/14DAP1.136340.739

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.431670.326

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper5.386970.058
Mature Green Tomato/Ripe Tomato2.17098N/A
Immature Eggplant/Mature Eggplant0.56610.064
Ripe Pepper/Ripe Tomato1.777180.256
Mature Eggplant/Ripe Tomato7.62830.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.238841
12-2/M820.718530.727
12-4/M820.91211
1-3/M821.635231
2-1-1/M821.542260.764
2-1/M820.39790.318
2-6/M822.946410.405
3-2/M821.111330.717
4-1-1/M821.86958N/A
4-1/M82N/AN/A
4-3-2/M822.93013N/A
4-3/M821.229821
5-3/M820.824591
6-2/M822.15356N/A
6-3/M820.902481
7-1/M821.2114N/A
7-2/M822.13909N/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.186350.493
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.844450.483
IL7-3/WTpooled1.0707N/A
IL12-4/WTpooled0.838980.71
IL1-4/WTpooled1.033241
WT/WTpooled1.201681

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.508890.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.03220.921
DC3000/delta hrp 6h0.97160.95
DC3000/delta hrp 12h1.519271
DC3000/delta hrp 24h0.465730.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.044421
Exp 36h0.708860.589
Exp 60h0.490080.257

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.014441
Var 0h0.582360.339
Var 12h I row2-row10.962080.77
Var 12h NI row2-row11.235231
Var 36h I row2-row10.856861
Var 36h NI row2-row11.112461
Var 60h I row2-row10.948620.306
Var 60h NI row2-row11.076341
Time course 0hI-0hNI0.928320.452
Time course 12hI-12hNI0.917390.3
Time course 36hI-36hNI0.976380.504
Time course 60hI-60hNI0.524990.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.030590.541
transgenic ySAMdc/azygous control (breaker)1.178021
transgenic ySAMdc/azygous control (red)1.098260.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.81870.149

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.540290.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.593870.093
Manapal/WT (break)4.740090.13
Manapal/WT (red)3.031870.133