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Expression of 1-1-6.3.7.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.651540.039
27DAP/17DAP1.136410.86
39DAP/27DAP1.840430.057
41DAP/39DAP0.838120.401
42DAP/41DAP1.123680.949
43DAP/42DAP1.109430.993
47DAP/43DAP0.661420.119
52DAP/47DAP1.095390.867
57DAP/52DAP1.201620.946

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.004510.679
17DAP/reference1.039470.653
27DAP/reference1.179760.071
39DAP/reference1.150920.413
41DAP/reference1.290180.013
42DAP/reference0.995360.517
43DAP/reference1.124970.057
47DAP/reference0.991210.535
52DAP/reference1.10940.302
57DAP/reference1.20360.153

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.960720.644
27DAP/17DAP1.01470.968
39DAP/27DAP1.32090.182
41DAP/39DAP0.981130.98
42DAP/41DAP1.013631
43DAP/42DAP1.20690.019
47DAP/43DAP0.962170.774
52DAP/47DAP0.990890.935
57DAP/52DAP0.965510.651
57DAP/7DAP0.954571

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.291150.095
17DAP/reference1.065540.971
27DAP/reference0.98690.571
39DAP/reference0.94790.198
41DAP/reference0.97920.489
42DAP/reference0.897710.178
43DAP/reference1.004530.694
47DAP/reference0.941870.504
52DAP/reference0.965420.435
57DAP/reference0.882180.071

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.053480.724
17DAP/reference1.170940.12
27DAP/reference1.354050.08
39DAP/reference1.02820.935
41DAP/reference1.088050.657
42DAP/reference1.321420.023
43DAP/reference2.021140.042
47DAP/reference1.423110.008
52DAP/reference1.411910.006
57DAP/reference1.166980.363

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.27860.158
17DAP/reference1.126760.298
27DAP/reference0.887160.155
39DAP/reference1.021320.962
41DAP/reference1.016740.826
42DAP/reference0.913830.172
43DAP/reference0.964880.416
47DAP/reference1.21910.163
52DAP/reference1.029140.941
57DAP/reference0.965270.509

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.319230.735
26DAP/20DAP1.215980.357
34DAP/26DAP1.026691
51DAP/34DAP1.108720.719
52DAP/51DAP0.933061
53DAP/52DAP1.046260.858
55DAP/53DAP1.004361
57DAP/55DAP1.125840.881
62DAP/57DAP1.328980.393
68DAP/62DAP1.278040.336
68DAP/14DAP1.13544N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.221820.105

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.494320.021
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.32969N/A
Mature Eggplant/Ripe Tomato0.682271

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.030111
1-1-2/M821.151541
12-2/M821.03671
12-4/M820.881991
1-3/M821.629361
2-1-1/M820.767170.784
2-1/M820.92882N/A
2-6/M821.015261
3-2/M821.035151
4-1-1/M820.654910.962
4-1/M821.14101N/A
4-3-2/M820.990311
4-3/M821.40741
5-3/M821.050331
6-2/M821.326211
6-3/M820.927061
7-1/M820.69003N/A
7-2/M821.119621
9-3-2/M820.784130.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.52388N/A
IL2-6/WTpooled0.79460.473
IL7-5/WTpooled1.60933N/A
IL7-3/WTpooled1.152811
IL12-4/WTpooled0.973591
IL1-4/WTpooled0.88630.562
WT/WTpooled1.035171

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.060441

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.811780.941
DC3000/delta hrp 6h1.338430.672
DC3000/delta hrp 12h0.992331
DC3000/delta hrp 24h1.010771

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.15870.068
DC3000 delta B/DC3000 delta AB1.158810.335

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.620520.328
Exp 36hN/AN/A
Exp 60h0.817040.855

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.999431
Var 0h0.972170.457
Var 12h I row2-row11.087950.58
Var 12h NI row2-row11.140620.649
Var 36h I row2-row11.027571
Var 36h NI row2-row10.847880.378
Var 60h I row2-row10.824450.374
Var 60h NI row2-row10.950860.756
Time course 0hI-0hNI0.969640.765
Time course 12hI-12hNI1.007840.868
Time course 36hI-36hNI1.375870.007
Time course 60hI-60hNI2.067830.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.457970.931
transgenic ySAMdc/azygous control (breaker)1.146081
transgenic ySAMdc/azygous control (red)1.656530.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.015550.471

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.390960.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.330480.164