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Expression of 1-1-6.4.11.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.464440.033
27DAP/17DAP2.878430.066
39DAP/27DAP1.639490.144
41DAP/39DAP0.569220.043
42DAP/41DAP1.05061
43DAP/42DAP3.297480.019
47DAP/43DAP1.162920.463
52DAP/47DAP0.825740.551
57DAP/52DAP0.968540.952

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.618940.028
17DAP/reference1.057740.355
27DAP/reference2.006380.008
39DAP/reference1.9860.066
41DAP/reference1.633010.014
42DAP/reference3.702820.001
43DAP/reference2.448890.006
47DAP/reference4.462650.001
52DAP/reference2.073960.009
57DAP/reference2.174650.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.204250.525
27DAP/17DAP0.860660.648
39DAP/27DAP1.191210.643
41DAP/39DAP1.711180.895
42DAP/41DAP1.195360.879
43DAP/42DAP1.064031
47DAP/43DAP1.049820.93
52DAP/47DAP0.936130.824
57DAP/52DAP1.032930.899
57DAP/7DAP0.881021

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.671230.066
17DAP/reference0.786270.014
27DAP/reference0.832960.042
39DAP/reference0.825450.027
41DAP/reference1.030921
42DAP/reference1.178890.174
43DAP/reference1.695770.007
47DAP/reference1.700350.015
52DAP/reference1.131790.229
57DAP/reference1.257460.014

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.488650.005
17DAP/reference1.496410.008
27DAP/reference1.373190.072
39DAP/reference0.913690.227
41DAP/reference1.041570.688
42DAP/reference1.914220.007
43DAP/reference1.15560.485
47DAP/reference1.260830.011
52DAP/reference1.183770.061
57DAP/reference0.82820.107

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.576810.03
17DAP/reference0.77750.167
27DAP/reference0.804350.045
39DAP/reference0.813830.028
41DAP/reference0.792790.04
42DAP/reference1.345240.068
43DAP/reference1.543930.034
47DAP/reference4.301030.005
52DAP/reference2.515660.036
57DAP/reference2.351240.009

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.013571
26DAP/20DAP4.41560.056
34DAP/26DAP2.297950.819
51DAP/34DAP1.650790.535
52DAP/51DAP1.419890.044
53DAP/52DAP1.219980.083
55DAP/53DAP1.186980.22
57DAP/55DAP0.717860.088
62DAP/57DAP1.02251
68DAP/62DAP2.559510.523
68DAP/14DAP0.701590.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.585890.057

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.375940.018
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.111330.224
Mature Eggplant/Ripe Tomato0.044940.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.257380.536
1-1-2/M821.15621
12-2/M821.010431
12-4/M821.316491
1-3/M821.654810.26
2-1-1/M821.131810.689
2-1/M820.770210.345
2-6/M821.093590.594
3-2/M820.988771
4-1-1/M821.095851
4-1/M820.746890.737
4-3-2/M821.042741
4-3/M821.037531
5-3/M821.02291
6-2/M820.646610.444
6-3/M821.050021
7-1/M820.972831
7-2/M821.181960.385
9-3-2/M821.271491

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.799320.247
IL2-6/WTpooled0.826430.473
IL7-5/WTpooled0.59521
IL7-3/WTpooled1.297241
IL12-4/WTpooled1.043130.624
IL1-4/WTpooled0.97461
WT/WTpooled1.007611

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.276170.193

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.928711
DC3000/delta hrp 6h1.05356N/A
DC3000/delta hrp 12h0.818491
DC3000/delta hrp 24h0.972090.84

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.23475N/A
DC3000 delta B/DC3000 delta AB1.127210.296

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.001431
Var 0h1.065410.98
Var 12h I row2-row11.469150.193
Var 12h NI row2-row11.096491
Var 36h I row2-row10.961261
Var 36h NI row2-row12.337170.482
Var 60h I row2-row10.38560.285
Var 60h NI row2-row10.993011
Time course 0hI-0hNI0.798970.16
Time course 12hI-12hNI1.154880.445
Time course 36hI-36hNI0.883640.29
Time course 60hI-60hNI2.119040.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.090880.318
transgenic ySAMdc/azygous control (breaker)1.171631
transgenic ySAMdc/azygous control (red)0.950571

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.147270.038

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.930210.59

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.358330.307
Manapal/WT (break)1.015711
Manapal/WT (red)0.926360.607