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Expression of 1-1-6.4.13.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.903540.232
27DAP/17DAP1.124260.845
39DAP/27DAP1.080540.919
41DAP/39DAP0.894150.59
42DAP/41DAP1.045030.933
43DAP/42DAP0.972750.912
47DAP/43DAP0.843210.504
52DAP/47DAP0.983680.907
57DAP/52DAP1.086920.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.025950.872
17DAP/reference0.93260.06
27DAP/reference0.9310.157
39DAP/reference1.043730.734
41DAP/reference1.023250.48
42DAP/reference1.061130.01
43DAP/reference1.039860.495
47DAP/reference1.008361
52DAP/reference0.90590.143
57DAP/reference1.110180.097

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.009691
27DAP/17DAP1.02330.932
39DAP/27DAP0.996461
41DAP/39DAP0.929930.781
42DAP/41DAP1.031240.861
43DAP/42DAP1.033390.413
47DAP/43DAP1.046110.756
52DAP/47DAP0.965360.763
57DAP/52DAP1.003791
57DAP/7DAP0.951871

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.045710.813
17DAP/reference0.988640.518
27DAP/reference0.97060.325
39DAP/reference1.029680.411
41DAP/reference1.031760.43
42DAP/reference1.037820.534
43DAP/reference1.031970.537
47DAP/reference1.100830.259
52DAP/reference1.095110.076
57DAP/reference1.158590.094

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.092570.284
17DAP/reference0.97510.487
27DAP/reference1.006780.79
39DAP/reference1.052750.424
41DAP/reference1.028610.737
42DAP/reference0.998460.723
43DAP/reference0.92650.175
47DAP/reference1.082270.054
52DAP/reference0.940280.078
57DAP/reference0.981890.433

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.02960.691
17DAP/reference0.999250.855
27DAP/reference0.986260.357
39DAP/reference0.975180.299
41DAP/reference0.972990.371
42DAP/reference0.929840.049
43DAP/reference0.947380.348
47DAP/reference0.949740.139
52DAP/reference0.959950.505
57DAP/reference0.973180.262

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.063480.43
26DAP/20DAP1.129570.453
34DAP/26DAP1.017051
51DAP/34DAP1.021050.869
52DAP/51DAP0.985141
53DAP/52DAP1.06180.594
55DAP/53DAP0.959040.686
57DAP/55DAP0.98688N/A
62DAP/57DAP1.19403N/A
68DAP/62DAP1.019371
68DAP/14DAP1.152050.045

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.080930.306

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.10930.089
Mature Green Tomato/Ripe Tomato0.782930.411
Immature Eggplant/Mature Eggplant1.433580.05
Ripe Pepper/Ripe Tomato0.586871
Mature Eggplant/Ripe Tomato0.30891

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.002491
1-1-2/M820.994621
12-2/M820.951830.955
12-4/M821.000121
1-3/M820.946860.378
2-1-1/M820.888540.465
2-1/M821.24451
2-6/M820.965871
3-2/M821.049730.84
4-1-1/M820.996351
4-1/M820.998631
4-3-2/M820.857021
4-3/M820.917720.72
5-3/M820.979631
6-2/M820.981581
6-3/M821.023611
7-1/M821.020411
7-2/M820.947650.599
9-3-2/M820.834650.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.886990.473
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.26050.362
IL12-4/WTpooled1.063240.695
IL1-4/WTpooled1.11579N/A
WT/WTpooled0.957061

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.90131

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.980421
DC3000/delta hrp 6h1.07260.95
DC3000/delta hrp 12h0.929580.266
DC3000/delta hrp 24h1.051160.62

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.409920.068
DC3000 delta B/DC3000 delta AB1.258340.172

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h0.924550.943
Exp 60h0.917960.855

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.996961
Var 0h1.106120.98
Var 12h I row2-row11.279980.242
Var 12h NI row2-row11.015871
Var 36h I row2-row11.171761
Var 36h NI row2-row11.020631
Var 60h I row2-row10.98980.832
Var 60h NI row2-row11.081670.904
Time course 0hI-0hNI1.048860.867
Time course 12hI-12hNI1.041990.773
Time course 36hI-36hNI1.063530.114
Time course 60hI-60hNI1.93150.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.79040.261
transgenic ySAMdc/azygous control (breaker)1.521681
transgenic ySAMdc/azygous control (red)1.389350.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.938960.049

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.869730.308

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.327710.307
Manapal/WT (break)0.790661
Manapal/WT (red)0.712710.216