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Expression of 1-1-6.4.17.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.270550.912
27DAP/17DAP1.02661
39DAP/27DAP0.91150.278
41DAP/39DAP1.643760.67
42DAP/41DAP2.021760.054
43DAP/42DAP0.959030.888
47DAP/43DAP1.785250.208
52DAP/47DAP0.522930.048
57DAP/52DAP1.059170.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.787870.177
17DAP/reference0.974310.664
27DAP/reference1.060110.759
39DAP/reference0.729970.054
41DAP/reference0.935430.341
42DAP/reference1.169390.366
43DAP/reference0.894120.273
47DAP/reference1.345690.006
52DAP/reference1.300220.32
57DAP/reference1.389260.109

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.384250.058
27DAP/17DAP0.840570.363
39DAP/27DAP0.70990.036
41DAP/39DAP0.940810.839
42DAP/41DAP1.093440.727
43DAP/42DAP1.064140.478
47DAP/43DAP1.115610.641
52DAP/47DAP1.150850.58
57DAP/52DAP1.047690.891
57DAP/7DAP0.94581

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.642150.067
17DAP/reference1.057061
27DAP/reference0.943970.348
39DAP/reference0.742420.025
41DAP/reference0.781420.103
42DAP/reference0.75520.014
43DAP/reference0.873460.145
47DAP/reference0.98770.671
52DAP/reference0.782780.035
57DAP/reference0.844730.086

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.924530.532
17DAP/reference0.982430.626
27DAP/reference0.95460.467
39DAP/reference1.227070.67
41DAP/reference1.12550.188
42DAP/reference1.150060.102
43DAP/reference1.050210.831
47DAP/reference1.087020.454
52DAP/reference1.062911
57DAP/reference1.044050.754

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.84890.214
17DAP/reference0.993440.778
27DAP/reference0.836490.147
39DAP/reference0.857750.122
41DAP/reference0.908470.185
42DAP/reference1.157380.287
43DAP/reference1.044110.858
47DAP/reference1.253190.066
52DAP/reference1.644260.674
57DAP/reference1.374260.049

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.874870.021
26DAP/20DAP0.906271
34DAP/26DAP1.03391
51DAP/34DAP0.589060.049
52DAP/51DAP1.129920.662
53DAP/52DAP0.971760.876
55DAP/53DAP1.016311
57DAP/55DAP2.349470.71
62DAP/57DAP1.036720.994
68DAP/62DAP1.846510.845
68DAP/14DAP1.279471

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.905280.422

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.519680.045
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.11358N/A
Mature Eggplant/Ripe Tomato0.18960.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.342420.574
1-1-2/M821.292991
12-2/M821.012921
12-4/M821.254211
1-3/M828.230240.248
2-1-1/M821.377040.293
2-1/M821.218181
2-6/M821.113160.395
3-2/M821.384330.717
4-1-1/M821.346730.977
4-1/M821.641790.512
4-3-2/M821.0990.262
4-3/M821.483810.268
5-3/M820.960651
6-2/M820.95701N/A
6-3/M820.503190.637
7-1/M820.885880.509
7-2/M821.003381
9-3-2/M821.400131

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.77991N/A
IL2-6/WTpooled0.839820.473
IL7-5/WTpooled0.854321
IL7-3/WTpooled1.022851
IL12-4/WTpooled0.984191
IL1-4/WTpooled0.813220.415
WT/WTpooled1.058461

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.939230.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.927160.849
DC3000/delta hrp 6h0.98102N/A
DC3000/delta hrp 12h0.711891
DC3000/delta hrp 24h0.890060.212

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.666120.029
DC3000 delta B/DC3000 delta AB0.403830.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.062241
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)0.937761

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.137150.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.860050.333
Manapal/WT (red)0.489090.216