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Expression of 1-1-6.4.19.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.027760.997
27DAP/17DAP1.090930.872
39DAP/27DAP1.067870.899
41DAP/39DAP1.119720.498
42DAP/41DAP1.033131
43DAP/42DAP0.81810.613
47DAP/43DAP1.333230.258
52DAP/47DAP1.025550.982
57DAP/52DAP0.879610.85

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.325860.101
17DAP/reference1.263230.166
27DAP/reference1.357680.024
39DAP/reference1.034970.771
41DAP/reference1.271450.133
42DAP/reference1.181450.191
43DAP/reference1.026420.866
47DAP/reference1.290590.085
52DAP/reference1.63580.035
57DAP/reference1.327330.068

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.872830.238
27DAP/17DAP1.006261
39DAP/27DAP1.131520.331
41DAP/39DAP1.06140.914
42DAP/41DAP0.93070.556
43DAP/42DAP1.046930.446
47DAP/43DAP0.996720.939
52DAP/47DAP1.07690.734
57DAP/52DAP1.04390.871
57DAP/7DAP1.182411

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.202190.399
17DAP/reference1.470150.023
27DAP/reference1.930120.007
39DAP/reference1.993520.008
41DAP/reference1.773040.018
42DAP/reference1.83580.007
43DAP/reference2.644040.041
47DAP/reference1.238730.259
52DAP/reference1.423220.007
57DAP/reference1.633340.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.186210.279
17DAP/reference1.188790.518
27DAP/reference1.005851
39DAP/reference1.131520.29
41DAP/reference1.270250.088
42DAP/reference1.41760.009
43DAP/reference1.351160.222
47DAP/reference1.2270.124
52DAP/reference1.380990.008
57DAP/reference1.003280.68

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.223740.059
17DAP/reference1.396730.07
27DAP/reference1.448820.02
39DAP/reference1.239040.035
41DAP/reference1.426380.008
42DAP/reference1.308190.025
43DAP/reference1.701970.007
47DAP/reference1.15860.372
52DAP/reference1.54370.13
57DAP/reference1.526850.095

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.867470.841
26DAP/20DAP0.885440.244
34DAP/26DAP1.177460.819
51DAP/34DAP1.030380.84
52DAP/51DAP1.133840.101
53DAP/52DAP1.003171
55DAP/53DAP1.061570.656
57DAP/55DAP1.07530.407
62DAP/57DAP1.080830.935
68DAP/62DAP1.197541
68DAP/14DAP1.294520.223

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.864950.145

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.634410.028
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.24957N/A
1-1-2/M820.905040.958
12-2/M82N/AN/A
12-4/M821.077570.655
1-3/M820.64974N/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.45067N/A
3-2/M820.882391
4-1-1/M821.011241
4-1/M82N/AN/A
4-3-2/M821.187511
4-3/M820.46595N/A
5-3/M821.058661
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.24831N/A
7-2/M821.26927N/A
9-3-2/M820.892251

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.3257N/A
IL2-6/WTpooled1.767420.419
IL7-5/WTpooled1.28995N/A
IL7-3/WTpooled1.228760.362
IL12-4/WTpooled1.540430.516
IL1-4/WTpooled1.269991
WT/WTpooled1.029161

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.06761

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.941941
DC3000/delta hrp 6h0.97743N/A
DC3000/delta hrp 12h1.218261
DC3000/delta hrp 24h0.76970.074

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.101930.29
DC3000 delta B/DC3000 delta AB1.065160.429

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.264931
Exp 36hN/AN/A
Exp 60h0.853660.32

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.987381
Var 0h1.147430.305
Var 12h I row2-row11.05430.58
Var 12h NI row2-row10.878810.546
Var 36h I row2-row10.730320.805
Var 36h NI row2-row11.053381
Var 60h I row2-row11.122380.562
Var 60h NI row2-row11.24850.904
Time course 0hI-0hNI1.054780.764
Time course 12hI-12hNI1.001321
Time course 36hI-36hNI0.850760.023
Time course 60hI-60hNI1.002151

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.861310.093

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.865560.35

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A