Expression of 1-1-6.4.19.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02776 | 0.997 |
27DAP/17DAP | 1.09093 | 0.872 |
39DAP/27DAP | 1.06787 | 0.899 |
41DAP/39DAP | 1.11972 | 0.498 |
42DAP/41DAP | 1.03313 | 1 |
43DAP/42DAP | 0.8181 | 0.613 |
47DAP/43DAP | 1.33323 | 0.258 |
52DAP/47DAP | 1.02555 | 0.982 |
57DAP/52DAP | 0.87961 | 0.85 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.32586 | 0.101 |
17DAP/reference | 1.26323 | 0.166 |
27DAP/reference | 1.35768 | 0.024 |
39DAP/reference | 1.03497 | 0.771 |
41DAP/reference | 1.27145 | 0.133 |
42DAP/reference | 1.18145 | 0.191 |
43DAP/reference | 1.02642 | 0.866 |
47DAP/reference | 1.29059 | 0.085 |
52DAP/reference | 1.6358 | 0.035 |
57DAP/reference | 1.32733 | 0.068 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.87283 | 0.238 |
27DAP/17DAP | 1.00626 | 1 |
39DAP/27DAP | 1.13152 | 0.331 |
41DAP/39DAP | 1.0614 | 0.914 |
42DAP/41DAP | 0.9307 | 0.556 |
43DAP/42DAP | 1.04693 | 0.446 |
47DAP/43DAP | 0.99672 | 0.939 |
52DAP/47DAP | 1.0769 | 0.734 |
57DAP/52DAP | 1.0439 | 0.871 |
57DAP/7DAP | 1.18241 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20219 | 0.399 |
17DAP/reference | 1.47015 | 0.023 |
27DAP/reference | 1.93012 | 0.007 |
39DAP/reference | 1.99352 | 0.008 |
41DAP/reference | 1.77304 | 0.018 |
42DAP/reference | 1.8358 | 0.007 |
43DAP/reference | 2.64404 | 0.041 |
47DAP/reference | 1.23873 | 0.259 |
52DAP/reference | 1.42322 | 0.007 |
57DAP/reference | 1.63334 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.18621 | 0.279 |
17DAP/reference | 1.18879 | 0.518 |
27DAP/reference | 1.00585 | 1 |
39DAP/reference | 1.13152 | 0.29 |
41DAP/reference | 1.27025 | 0.088 |
42DAP/reference | 1.4176 | 0.009 |
43DAP/reference | 1.35116 | 0.222 |
47DAP/reference | 1.227 | 0.124 |
52DAP/reference | 1.38099 | 0.008 |
57DAP/reference | 1.00328 | 0.68 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22374 | 0.059 |
17DAP/reference | 1.39673 | 0.07 |
27DAP/reference | 1.44882 | 0.02 |
39DAP/reference | 1.23904 | 0.035 |
41DAP/reference | 1.42638 | 0.008 |
42DAP/reference | 1.30819 | 0.025 |
43DAP/reference | 1.70197 | 0.007 |
47DAP/reference | 1.1586 | 0.372 |
52DAP/reference | 1.5437 | 0.13 |
57DAP/reference | 1.52685 | 0.095 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.86747 | 0.841 |
26DAP/20DAP | 0.88544 | 0.244 |
34DAP/26DAP | 1.17746 | 0.819 |
51DAP/34DAP | 1.03038 | 0.84 |
52DAP/51DAP | 1.13384 | 0.101 |
53DAP/52DAP | 1.00317 | 1 |
55DAP/53DAP | 1.06157 | 0.656 |
57DAP/55DAP | 1.0753 | 0.407 |
62DAP/57DAP | 1.08083 | 0.935 |
68DAP/62DAP | 1.19754 | 1 |
68DAP/14DAP | 1.29452 | 0.223 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.86495 | 0.145 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.63441 | 0.028 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.24957 | |
1-1-2/M82 | 0.90504 | 0.958 |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.07757 | 0.655 |
1-3/M82 | 0.64974 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.45067 | |
3-2/M82 | 0.88239 | 1 |
4-1-1/M82 | 1.01124 | 1 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.18751 | 1 |
4-3/M82 | 0.46595 | |
5-3/M82 | 1.05866 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.24831 | |
7-2/M82 | 1.26927 | |
9-3-2/M82 | 0.89225 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.3257 | |
IL2-6/WTpooled | 1.76742 | 0.419 |
IL7-5/WTpooled | 1.28995 | |
IL7-3/WTpooled | 1.22876 | 0.362 |
IL12-4/WTpooled | 1.54043 | 0.516 |
IL1-4/WTpooled | 1.26999 | 1 |
WT/WTpooled | 1.02916 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.0676 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94194 | 1 |
DC3000/delta hrp 6h | 0.97743 | |
DC3000/delta hrp 12h | 1.21826 | 1 |
DC3000/delta hrp 24h | 0.7697 | 0.074 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.10193 | 0.29 |
DC3000 delta B/DC3000 delta AB | 1.06516 | 0.429 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.26493 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 0.85366 | 0.32 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98738 | 1 |
Var 0h | 1.14743 | 0.305 |
Var 12h I row2-row1 | 1.0543 | 0.58 |
Var 12h NI row2-row1 | 0.87881 | 0.546 |
Var 36h I row2-row1 | 0.73032 | 0.805 |
Var 36h NI row2-row1 | 1.05338 | 1 |
Var 60h I row2-row1 | 1.12238 | 0.562 |
Var 60h NI row2-row1 | 1.2485 | 0.904 |
Time course 0hI-0hNI | 1.05478 | 0.764 |
Time course 12hI-12hNI | 1.00132 | 1 |
Time course 36hI-36hNI | 0.85076 | 0.023 |
Time course 60hI-60hNI | 1.00215 | 1 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.86131 | 0.093 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.86556 | 0.35 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | N/A | N/A |
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