Expression of 1-1-6.4.2.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.33017 | 0.498 |
27DAP/17DAP | 0.80694 | 0.724 |
39DAP/27DAP | 1.25758 | 0.833 |
41DAP/39DAP | 1.65825 | 0.432 |
42DAP/41DAP | 1.12586 | 0.929 |
43DAP/42DAP | 1.18547 | 1 |
47DAP/43DAP | 0.83939 | 0.487 |
52DAP/47DAP | 1.39505 | 0.601 |
57DAP/52DAP | 1.20238 | 0.996 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83302 | 0.025 |
17DAP/reference | 0.6631 | 0.007 |
27DAP/reference | 1.01311 | 0.885 |
39DAP/reference | 0.7825 | 0.011 |
41DAP/reference | 0.63942 | 0.009 |
42DAP/reference | 0.96397 | 0.295 |
43DAP/reference | 0.8471 | 0.039 |
47DAP/reference | 1.06236 | 1 |
52DAP/reference | 1.68536 | 0.02 |
57DAP/reference | 1.71215 | 0.013 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.38559 | 0.05 |
27DAP/17DAP | 0.77528 | 0.537 |
39DAP/27DAP | 1.07996 | 0.478 |
41DAP/39DAP | 0.96888 | 0.893 |
42DAP/41DAP | 1.18165 | 0.106 |
43DAP/42DAP | 1.00881 | 0.83 |
47DAP/43DAP | 1.03111 | 0.951 |
52DAP/47DAP | 1.18733 | 0.449 |
57DAP/52DAP | 1.40625 | 0.091 |
57DAP/7DAP | 1.31252 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.72122 | 0.122 |
17DAP/reference | N/A | N/A |
27DAP/reference | 0.84347 | |
39DAP/reference | 0.7758 | 0.034 |
41DAP/reference | 0.81553 | 0.259 |
42DAP/reference | 0.78549 | 0.029 |
43DAP/reference | 1.03134 | 0.727 |
47DAP/reference | 1.17763 | 0.36 |
52DAP/reference | 0.7688 | 0.031 |
57DAP/reference | 1.61101 | 0.014 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88308 | 0.182 |
17DAP/reference | 0.86825 | 0.089 |
27DAP/reference | 1.14671 | 0.639 |
39DAP/reference | 1.23049 | 0.449 |
41DAP/reference | 1.54876 | 0.01 |
42DAP/reference | 1.2438 | 0.031 |
43DAP/reference | 1.00405 | 0.581 |
47DAP/reference | 0.90021 | 0.113 |
52DAP/reference | 1.21613 | 0.074 |
57DAP/reference | 0.82835 | 0.107 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.75262 | |
17DAP/reference | 1.19795 | 0.728 |
27DAP/reference | 1.08742 | |
39DAP/reference | 1.12798 | 0.528 |
41DAP/reference | 1.04977 | 1 |
42DAP/reference | 0.82097 | |
43DAP/reference | 1.95106 | 0.03 |
47DAP/reference | 1.12247 | 0.63 |
52DAP/reference | 0.8288 | 0.193 |
57DAP/reference | 2.19444 | 0.015 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.66971 | 0.42 |
26DAP/20DAP | 1.21926 | 0.642 |
34DAP/26DAP | 1.23073 | 1 |
51DAP/34DAP | 1.05323 | 1 |
52DAP/51DAP | 1.7298 | 0.053 |
53DAP/52DAP | 0.76077 | 0.101 |
55DAP/53DAP | 1.32523 | 0.048 |
57DAP/55DAP | 0.53642 | 0.013 |
62DAP/57DAP | 1.19898 | 0.723 |
68DAP/62DAP | 3.12697 | 0.022 |
68DAP/14DAP | 3.85625 | 0.022 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.6341 | 0.059 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.27708 | 0.176 |
Mature Green Tomato/Ripe Tomato | 0.7037 | 0.148 |
Immature Eggplant/Mature Eggplant | 1.29654 | 0.092 |
Ripe Pepper/Ripe Tomato | 1.41748 | 1 |
Mature Eggplant/Ripe Tomato | 1.0616 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.92846 | 0.56 |
1-1-2/M82 | 1.07089 | 1 |
12-2/M82 | 0.99389 | 0.955 |
12-4/M82 | 0.99321 | 1 |
1-3/M82 | 0.77745 | 0.378 |
2-1-1/M82 | 0.86948 | 0.683 |
2-1/M82 | 0.99125 | 1 |
2-6/M82 | 1.16291 | 0.695 |
3-2/M82 | 1.21882 | 0.967 |
4-1-1/M82 | 0.78038 | 1 |
4-1/M82 | 0.99502 | |
4-3-2/M82 | 0.97109 | |
4-3/M82 | 1.05119 | 1 |
5-3/M82 | 1.05728 | 1 |
6-2/M82 | 1.17271 | |
6-3/M82 | 1.10991 | 1 |
7-1/M82 | 0.77039 | 0.476 |
7-2/M82 | 1.00585 | 1 |
9-3-2/M82 | 0.84443 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.85522 | 1 |
IL2-6/WTpooled | 0.93402 | |
IL7-5/WTpooled | 1.57293 | |
IL7-3/WTpooled | 0.67035 | 1 |
IL12-4/WTpooled | 1.04942 | 1 |
IL1-4/WTpooled | 1.03786 | 1 |
WT/WTpooled | 1.01 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.10593 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02898 | 0.921 |
DC3000/delta hrp 6h | 1.00196 | 0.95 |
DC3000/delta hrp 12h | 1.31876 | 1 |
DC3000/delta hrp 24h | 1.09496 | 0.212 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.10825 | 0.11 |
DC3000 delta B/DC3000 delta AB | 1.14153 | 0.381 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.96669 | 1 |
Exp 36h | 0.93537 | 0.879 |
Exp 60h | 1.03091 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04514 | 1 |
Var 0h | 0.51808 | 0.98 |
Var 12h I row2-row1 | 0.9272 | 0.627 |
Var 12h NI row2-row1 | 1.17925 | 0.649 |
Var 36h I row2-row1 | 1.21506 | 0.298 |
Var 36h NI row2-row1 | 0.95847 | 0.706 |
Var 60h I row2-row1 | 0.92153 | 0.832 |
Var 60h NI row2-row1 | 0.90546 | 0.866 |
Time course 0hI-0hNI | 0.95213 | 0.649 |
Time course 12hI-12hNI | 0.99864 | 1 |
Time course 36hI-36hNI | 1.08845 | 0.166 |
Time course 60hI-60hNI | 1.36411 | 0.06 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.9496 | 0.377 |
transgenic ySAMdc/azygous control (breaker) | 0.75376 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.8873 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01023 | 0.766 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.02024 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.07621 | 1 |
Manapal/WT (break) | 0.86368 | 1 |
Manapal/WT (red) | 0.99913 | 0.863 |
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