Expression of 1-1-6.4.9.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.643340.078
27DAP/17DAP0.945850.877
39DAP/27DAP2.394470.152
41DAP/39DAP0.747680.184
42DAP/41DAP1.380410.353
43DAP/42DAP0.941390.877
47DAP/43DAP0.843930.517
52DAP/47DAP0.797460.508
57DAP/52DAP0.81110.734

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.949890.422
17DAP/reference0.877690.158
27DAP/reference0.816910.119
39DAP/reference0.824630.042
41DAP/reference0.753540.018
42DAP/reference0.916920.099
43DAP/reference1.077160.678
47DAP/reference0.819920.03
52DAP/reference0.750290.062
57DAP/reference0.840280.049

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.124360.785
27DAP/17DAP1.038961
39DAP/27DAP1.362950.534
41DAP/39DAP1.536150.232
42DAP/41DAP0.705940.01
43DAP/42DAP0.782690.137
47DAP/43DAP1.342390.039
52DAP/47DAP0.950650.837
57DAP/52DAP1.294660.451
57DAP/7DAP0.93151

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.133130.257
17DAP/reference1.116880.971
27DAP/reference1.146050.551
39DAP/reference1.200340.297
41DAP/reference1.074760.918
42DAP/reference1.290970.024
43DAP/reference1.223180.432
47DAP/reference1.034951
52DAP/reference1.135980.599
57DAP/reference1.249090.076

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.057680.852
17DAP/reference0.915290.223
27DAP/reference0.882480.188
39DAP/reference0.831810.019
41DAP/reference0.869230.098
42DAP/reference1.002660.655
43DAP/reference1.304610.338
47DAP/reference1.290670.232
52DAP/reference0.80140.017
57DAP/reference1.235680.009

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.515070.025
17DAP/reference0.834480.214
27DAP/reference1.039980.621
39DAP/reference0.953020.393
41DAP/reference0.839860.167
42DAP/reference0.990110.816
43DAP/reference0.889530.143
47DAP/reference0.827960.08
52DAP/reference0.948080.637
57DAP/reference0.84770.073

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.198641
26DAP/20DAP0.693330.512
34DAP/26DAP1.515790.819
51DAP/34DAP1.38990.581
52DAP/51DAP1.032381
53DAP/52DAP0.99860.811
55DAP/53DAP1.23090.722
57DAP/55DAP1.107730.348
62DAP/57DAP0.962550.994
68DAP/62DAP1.132340.821
68DAP/14DAP0.801121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.461950.072

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.347140.058
Mature Green Tomato/Ripe Tomato0.438120.017
Immature Eggplant/Mature Eggplant4.81120.05
Ripe Pepper/Ripe Tomato0.574250.224
Mature Eggplant/Ripe Tomato0.191760.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.906580.605
1-1-2/M821.005391
12-2/M821.281910.61
12-4/M820.856691
1-3/M825.37368
2-1-1/M821.484631
2-1/M82N/AN/A
2-6/M822.52379
3-2/M820.824161
4-1-1/M822.964381
4-1/M82N/AN/A
4-3-2/M823.74045
4-3/M822.956920.268
5-3/M820.539990.395
6-2/M825.99249
6-3/M822.170591
7-1/M820.929070.803
7-2/M824.18923
9-3-2/M823.22495

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled2.51203
IL2-6/WTpooled1.997980.395
IL7-5/WTpooled1.356280.792
IL7-3/WTpooled3.240911
IL12-4/WTpooled1.432420.557
IL1-4/WTpooled1.691650.426
WT/WTpooled0.903091

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.84660.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.879580.868
DC3000/delta hrp 6h1.155231
DC3000/delta hrp 12h1.20371
DC3000/delta hrp 24h0.881770.257

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB2.34206
DC3000 delta B/DC3000 delta AB2.47936

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.231011
Exp 36h2.4480.409
Exp 60h1.666890.226

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.019041
Var 0h1.023021
Var 12h I row2-row11.098670.736
Var 12h NI row2-row11.612380.191
Var 36h I row2-row11.336750.368
Var 36h NI row2-row10.59030.549
Var 60h I row2-row10.927650.952
Var 60h NI row2-row10.496920.292
Time course 0hI-0hNI1.278360.344
Time course 12hI-12hNI3.425870.006
Time course 36hI-36hNI7.478550.004
Time course 60hI-60hNI24.71890.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.016690.722
transgenic ySAMdc/azygous control (breaker)0.522590.173
transgenic ySAMdc/azygous control (red)0.902121

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.338520.092

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.321510.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.418010.123
Manapal/WT (red)N/AN/A