Expression of 1-1-6.4.9.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.64334 | 0.078 |
27DAP/17DAP | 0.94585 | 0.877 |
39DAP/27DAP | 2.39447 | 0.152 |
41DAP/39DAP | 0.74768 | 0.184 |
42DAP/41DAP | 1.38041 | 0.353 |
43DAP/42DAP | 0.94139 | 0.877 |
47DAP/43DAP | 0.84393 | 0.517 |
52DAP/47DAP | 0.79746 | 0.508 |
57DAP/52DAP | 0.8111 | 0.734 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94989 | 0.422 |
17DAP/reference | 0.87769 | 0.158 |
27DAP/reference | 0.81691 | 0.119 |
39DAP/reference | 0.82463 | 0.042 |
41DAP/reference | 0.75354 | 0.018 |
42DAP/reference | 0.91692 | 0.099 |
43DAP/reference | 1.07716 | 0.678 |
47DAP/reference | 0.81992 | 0.03 |
52DAP/reference | 0.75029 | 0.062 |
57DAP/reference | 0.84028 | 0.049 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.12436 | 0.785 |
27DAP/17DAP | 1.03896 | 1 |
39DAP/27DAP | 1.36295 | 0.534 |
41DAP/39DAP | 1.53615 | 0.232 |
42DAP/41DAP | 0.70594 | 0.01 |
43DAP/42DAP | 0.78269 | 0.137 |
47DAP/43DAP | 1.34239 | 0.039 |
52DAP/47DAP | 0.95065 | 0.837 |
57DAP/52DAP | 1.29466 | 0.451 |
57DAP/7DAP | 0.9315 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13313 | 0.257 |
17DAP/reference | 1.11688 | 0.971 |
27DAP/reference | 1.14605 | 0.551 |
39DAP/reference | 1.20034 | 0.297 |
41DAP/reference | 1.07476 | 0.918 |
42DAP/reference | 1.29097 | 0.024 |
43DAP/reference | 1.22318 | 0.432 |
47DAP/reference | 1.03495 | 1 |
52DAP/reference | 1.13598 | 0.599 |
57DAP/reference | 1.24909 | 0.076 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05768 | 0.852 |
17DAP/reference | 0.91529 | 0.223 |
27DAP/reference | 0.88248 | 0.188 |
39DAP/reference | 0.83181 | 0.019 |
41DAP/reference | 0.86923 | 0.098 |
42DAP/reference | 1.00266 | 0.655 |
43DAP/reference | 1.30461 | 0.338 |
47DAP/reference | 1.29067 | 0.232 |
52DAP/reference | 0.8014 | 0.017 |
57DAP/reference | 1.23568 | 0.009 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.51507 | 0.025 |
17DAP/reference | 0.83448 | 0.214 |
27DAP/reference | 1.03998 | 0.621 |
39DAP/reference | 0.95302 | 0.393 |
41DAP/reference | 0.83986 | 0.167 |
42DAP/reference | 0.99011 | 0.816 |
43DAP/reference | 0.88953 | 0.143 |
47DAP/reference | 0.82796 | 0.08 |
52DAP/reference | 0.94808 | 0.637 |
57DAP/reference | 0.8477 | 0.073 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.19864 | 1 |
26DAP/20DAP | 0.69333 | 0.512 |
34DAP/26DAP | 1.51579 | 0.819 |
51DAP/34DAP | 1.3899 | 0.581 |
52DAP/51DAP | 1.03238 | 1 |
53DAP/52DAP | 0.9986 | 0.811 |
55DAP/53DAP | 1.2309 | 0.722 |
57DAP/55DAP | 1.10773 | 0.348 |
62DAP/57DAP | 0.96255 | 0.994 |
68DAP/62DAP | 1.13234 | 0.821 |
68DAP/14DAP | 0.80112 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.46195 | 0.072 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.34714 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.43812 | 0.017 |
Immature Eggplant/Mature Eggplant | 4.8112 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.57425 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.19176 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.90658 | 0.605 |
1-1-2/M82 | 1.00539 | 1 |
12-2/M82 | 1.28191 | 0.61 |
12-4/M82 | 0.85669 | 1 |
1-3/M82 | 5.37368 | |
2-1-1/M82 | 1.48463 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 2.52379 | |
3-2/M82 | 0.82416 | 1 |
4-1-1/M82 | 2.96438 | 1 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 3.74045 | |
4-3/M82 | 2.95692 | 0.268 |
5-3/M82 | 0.53999 | 0.395 |
6-2/M82 | 5.99249 | |
6-3/M82 | 2.17059 | 1 |
7-1/M82 | 0.92907 | 0.803 |
7-2/M82 | 4.18923 | |
9-3-2/M82 | 3.22495 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 2.51203 | |
IL2-6/WTpooled | 1.99798 | 0.395 |
IL7-5/WTpooled | 1.35628 | 0.792 |
IL7-3/WTpooled | 3.24091 | 1 |
IL12-4/WTpooled | 1.43242 | 0.557 |
IL1-4/WTpooled | 1.69165 | 0.426 |
WT/WTpooled | 0.90309 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.8466 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.87958 | 0.868 |
DC3000/delta hrp 6h | 1.15523 | 1 |
DC3000/delta hrp 12h | 1.2037 | 1 |
DC3000/delta hrp 24h | 0.88177 | 0.257 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 2.34206 | |
DC3000 delta B/DC3000 delta AB | 2.47936 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.23101 | 1 |
Exp 36h | 2.448 | 0.409 |
Exp 60h | 1.66689 | 0.226 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01904 | 1 |
Var 0h | 1.02302 | 1 |
Var 12h I row2-row1 | 1.09867 | 0.736 |
Var 12h NI row2-row1 | 1.61238 | 0.191 |
Var 36h I row2-row1 | 1.33675 | 0.368 |
Var 36h NI row2-row1 | 0.5903 | 0.549 |
Var 60h I row2-row1 | 0.92765 | 0.952 |
Var 60h NI row2-row1 | 0.49692 | 0.292 |
Time course 0hI-0hNI | 1.27836 | 0.344 |
Time course 12hI-12hNI | 3.42587 | 0.006 |
Time course 36hI-36hNI | 7.47855 | 0.004 |
Time course 60hI-60hNI | 24.7189 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.01669 | 0.722 |
transgenic ySAMdc/azygous control (breaker) | 0.52259 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.90212 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.33852 | 0.092 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.32151 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.41801 | 0.123 |
Manapal/WT (red) | N/A | N/A |
|
|