TFGD
Home Expression Metabolite sRNA Links Contact

Expression of 1-1-7.1.1.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.948130.664
27DAP/17DAP0.895190.746
39DAP/27DAP1.045661
41DAP/39DAP1.088110.597
42DAP/41DAP1.033650.949
43DAP/42DAP1.082710.968
47DAP/43DAP0.879450.595
52DAP/47DAP1.011840.989
57DAP/52DAP1.014560.988

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.925280.128
17DAP/reference0.951590.503
27DAP/reference0.956960.339
39DAP/reference0.998750.991
41DAP/reference0.935530.341
42DAP/reference0.968970.169
43DAP/reference1.020540.812
47DAP/reference1.052310.215
52DAP/reference1.007141
57DAP/reference0.96190.358

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.013050.91
27DAP/17DAP1.027020.909
39DAP/27DAP0.95870.456
41DAP/39DAP0.983480.997
42DAP/41DAP1.017690.947
43DAP/42DAP1.026990.351
47DAP/43DAP1.004420.956
52DAP/47DAP1.017120.945
57DAP/52DAP1.023140.877
57DAP/7DAP1.070650.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.189390.15
17DAP/reference1.142050.01
27DAP/reference1.111960.02
39DAP/reference1.14050.016
41DAP/reference1.000070.848
42DAP/reference0.998990.751
43DAP/reference1.039150.569
47DAP/reference1.020980.804
52DAP/reference1.089310.081
57DAP/reference1.127070.158

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.968040.592
17DAP/reference0.926010.063
27DAP/reference1.033710.682
39DAP/reference1.013731
41DAP/reference0.979520.412
42DAP/reference0.950340.261
43DAP/reference0.91870.269
47DAP/reference0.938280.246
52DAP/reference0.815560.012
57DAP/reference0.816290.073

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.253030.093
17DAP/reference1.000550.87
27DAP/reference1.060930.237
39DAP/reference1.103920.094
41DAP/reference1.029140.754
42DAP/reference1.148460.114
43DAP/reference1.13490.233
47DAP/reference0.970510.409
52DAP/reference1.038320.89
57DAP/reference1.147930.171

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.948491
26DAP/20DAP1.077860.674
34DAP/26DAP0.985510.945
51DAP/34DAP1.112230.458
52DAP/51DAP1.001211
53DAP/52DAP1.037450.723
55DAP/53DAP0.84373N/A
57DAP/55DAP0.83940.286
62DAP/57DAP1.1193N/A
68DAP/62DAPN/AN/A
68DAP/14DAP0.996791

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.025920.908

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.959310.658
Mature Green Tomato/Ripe Tomato1.080020.478
Immature Eggplant/Mature Eggplant1.43010.05
Ripe Pepper/Ripe Tomato1.434190.258
Mature Eggplant/Ripe Tomato1.937930.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.893120.944
1-1-2/M820.975611
12-2/M821.019731
12-4/M820.996321
1-3/M820.981681
2-1-1/M820.952880.92
2-1/M820.979211
2-6/M820.929331
3-2/M820.997781
4-1-1/M821.077641
4-1/M820.945140.737
4-3-2/M821.002711
4-3/M820.914520.72
5-3/M820.96381
6-2/M821.025230.235
6-3/M821.000251
7-1/M821.066760.598
7-2/M821.016611
9-3-2/M820.911760.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.082120.277
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.569111
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.114310.426
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.00371

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.053170.921
DC3000/delta hrp 6h0.800140.942
DC3000/delta hrp 12h1.10915N/A
DC3000/delta hrp 24h1.047920.582

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.05840.145
DC3000 delta B/DC3000 delta AB1.095360.368

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.884871
Exp 36h1.272430.693
Exp 60h1.248020.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.00381
Var 0h1.120870.98
Var 12h I row2-row11.122870.506
Var 12h NI row2-row11.016621
Var 36h I row2-row11.122891
Var 36h NI row2-row11.009471
Var 60h I row2-row10.978530.952
Var 60h NI row2-row10.969381
Time course 0hI-0hNI0.884490.16
Time course 12hI-12hNI0.989810.972
Time course 36hI-36hNI1.192110.07
Time course 60hI-60hNI1.394790.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.976460.789
transgenic ySAMdc/azygous control (breaker)1.690580.248
transgenic ySAMdc/azygous control (red)1.265980.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.018970.556

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.298931

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.941281
Manapal/WT (break)1.10130.381
Manapal/WT (red)1.081841