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Expression of 1-1-7.1.13.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.970320.76
27DAP/17DAP0.975370.99
39DAP/27DAP1.204050.426
41DAP/39DAP0.948610.761
42DAP/41DAP0.963061
43DAP/42DAP0.976190.925
47DAP/43DAP0.899630.671
52DAP/47DAP1.404880.46
57DAP/52DAP1.0580.963

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.985970.578
17DAP/reference0.995670.904
27DAP/reference0.97330.61
39DAP/reference1.046150.691
41DAP/reference0.986510.814
42DAP/reference0.999980.707
43DAP/reference1.051080.445
47DAP/reference0.988530.366
52DAP/reference0.955350.33
57DAP/reference0.942060.124

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.98650.75
27DAP/17DAP0.96660.58
39DAP/27DAP1.003420.862
41DAP/39DAP1.06850.623
42DAP/41DAP0.963660.662
43DAP/42DAP0.94560.189
47DAP/43DAP1.007110.941
52DAP/47DAP1.007690.979
57DAP/52DAP1.015230.941
57DAP/7DAP1.089271

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.052930.6
17DAP/reference1.053440.023
27DAP/reference1.031570.035
39DAP/reference1.026170.705
41DAP/reference1.0370.507
42DAP/reference1.055970.233
43DAP/reference1.008870.672
47DAP/reference1.094790.45
52DAP/reference1.06410.041
57DAP/reference1.08220.057

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.025430.794
17DAP/reference0.990240.673
27DAP/reference1.023470.847
39DAP/reference0.959010.14
41DAP/reference0.935370.08
42DAP/reference0.995130.655
43DAP/reference0.942880.269
47DAP/reference1.051170.282
52DAP/reference0.962340.203
57DAP/reference0.95390.361

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.026330.588
17DAP/reference1.111510.371
27DAP/reference1.037390.487
39DAP/reference1.020270.483
41DAP/reference1.007430.939
42DAP/reference1.004860.923
43DAP/reference1.027180.7
47DAP/reference1.001531
52DAP/reference1.060290.463
57DAP/reference1.00610.971

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.00241
26DAP/20DAP1.051490.818
34DAP/26DAP0.965550.741
51DAP/34DAP0.909310.158
52DAP/51DAP1.023970.842
53DAP/52DAP1.035850.806
55DAP/53DAP0.936030.515
57DAP/55DAP0.997330.93
62DAP/57DAP1.045940.868
68DAP/62DAP0.968810.81
68DAP/14DAP0.985841

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.107680.131

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.219720.058
Mature Green Tomato/Ripe Tomato1.149680.881
Immature Eggplant/Mature Eggplant1.080180.334
Ripe Pepper/Ripe Tomato1.271671
Mature Eggplant/Ripe Tomato1.496360.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.040411
1-1-2/M821.000221
12-2/M821.004181
12-4/M820.986191
1-3/M821.026981
2-1-1/M821.094920.689
2-1/M821.113681
2-6/M820.971281
3-2/M821.037931
4-1-1/M821.136031
4-1/M820.86321
4-3-2/M821.002661
4-3/M821.001531
5-3/M820.980910.642
6-2/M821.010111
6-3/M821.031881
7-1/M820.992861
7-2/M821.037051
9-3-2/M820.999681

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.990041
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.856361
IL12-4/WTpooled0.987031
IL1-4/WTpooled1.64689N/A
WT/WTpooled0.918011

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.037751

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.019480.921
DC3000/delta hrp 6h0.933920.95
DC3000/delta hrp 12h0.929031
DC3000/delta hrp 24h1.003011

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.076920.121
DC3000 delta B/DC3000 delta AB0.981020.892

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.884251
Exp 36h1.214531
Exp 60h1.208581

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.982551
Var 0h1.035051
Var 12h I row2-row11.09310.283
Var 12h NI row2-row11.014361
Var 36h I row2-row11.021981
Var 36h NI row2-row10.847230.329
Var 60h I row2-row11.138021
Var 60h NI row2-row10.995171
Time course 0hI-0hNI0.966190.835
Time course 12hI-12hNI1.005820.888
Time course 36hI-36hNI1.159580.218
Time course 60hI-60hNI1.380860.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.869830.32
transgenic ySAMdc/azygous control (breaker)1.253820.248
transgenic ySAMdc/azygous control (red)1.127450.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.047930.063

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.991830.789

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.80211
Manapal/WT (break)1.10821
Manapal/WT (red)1.22670.222