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Expression of 1-1-7.1.2.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.848320.033
27DAP/17DAP1.412760.588
39DAP/27DAP1.328810.384
41DAP/39DAP0.901540.579
42DAP/41DAP1.17530.82
43DAP/42DAP1.112550.906
47DAP/43DAP1.067710.609
52DAP/47DAP0.927230.736
57DAP/52DAP1.041550.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.07710.421
17DAP/reference1.009871
27DAP/reference1.096330.435
39DAP/reference1.186810.301
41DAP/reference0.974780.667
42DAP/reference1.123070.338
43DAP/reference1.210970.34
47DAP/reference1.373580.002
52DAP/reference1.592490.008
57DAP/reference1.161360.249

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.446130.036
27DAP/17DAP1.050840.842
39DAP/27DAP1.030910.799
41DAP/39DAP0.962280.923
42DAP/41DAP1.030840.947
43DAP/42DAP1.050450.478
47DAP/43DAP0.927150.402
52DAP/47DAP1.355620.245
57DAP/52DAP1.319390.161
57DAP/7DAP1.123581

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.833340.076
17DAP/reference0.930070.253
27DAP/reference1.046240.804
39DAP/reference1.301490.114
41DAP/reference0.933290.326
42DAP/reference0.853580.019
43DAP/reference1.155710.111
47DAP/reference1.187390.311
52DAP/reference0.961610.363
57DAP/reference1.112770.308

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.861080.257
17DAP/reference1.359440.032
27DAP/reference1.267060.543
39DAP/reference1.490240.051
41DAP/reference1.323420.153
42DAP/reference1.087190.519
43DAP/reference1.08950.957
47DAP/reference1.211870.353
52DAP/reference1.464980.014
57DAP/reference1.422020.123

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.897810.048
17DAP/reference0.926550.417
27DAP/reference0.963910.516
39DAP/reference1.141090.227
41DAP/reference0.922920.293
42DAP/reference1.185410.45
43DAP/reference1.652270.016
47DAP/reference1.719620.009
52DAP/reference1.444940.057
57DAP/reference1.740760.01

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.259230.039
26DAP/20DAP1.29641
34DAP/26DAP2.116671
51DAP/34DAP1.218110.814
52DAP/51DAP3.085440.035
53DAP/52DAP0.672240.049
55DAP/53DAP1.567260.039
57DAP/55DAP0.688940.246
62DAP/57DAPN/AN/A
68DAP/62DAP0.636950.047
68DAP/14DAP1.106581

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.789720.166

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.795890.304
Mature Green Tomato/Ripe Tomato1.331840.299
Immature Eggplant/Mature Eggplant1.07227N/A
Ripe Pepper/Ripe Tomato0.378860.224
Mature Eggplant/Ripe Tomato0.347570.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.331320.742
1-1-2/M821.029541
12-2/M820.788160.955
12-4/M820.983961
1-3/M821.594690.248
2-1-1/M821.124290.689
2-1/M820.94270.74
2-6/M821.196230.695
3-2/M821.99295N/A
4-1-1/M821.488271
4-1/M820.90493N/A
4-3-2/M821.053760.241
4-3/M821.582761
5-3/M820.879920.49
6-2/M821.556170.253
6-3/M820.906231
7-1/M821.21861
7-2/M821.432080.324
9-3-2/M820.94591N/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.052391
IL2-6/WTpooled0.799850.358
IL7-5/WTpooled0.800920.559
IL7-3/WTpooled0.923181
IL12-4/WTpooled0.895561
IL1-4/WTpooled1.145841
WT/WTpooled1.118291

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.907140.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.901130.941
DC3000/delta hrp 6h1.091971
DC3000/delta hrp 12h1.244871
DC3000/delta hrp 24h0.488480.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.160530.313
DC3000 delta B/DC3000 delta AB1.396390.117

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.050641
Exp 36h0.794510.426
Exp 60h1.096881

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.976911
Var 0h0.928521
Var 12h I row2-row10.826270.565
Var 12h NI row2-row11.078270.649
Var 36h I row2-row11.041221
Var 36h NI row2-row11.301640.276
Var 60h I row2-row10.89040.293
Var 60h NI row2-row11.176041
Time course 0hI-0hNI0.885860.209
Time course 12hI-12hNI0.956240.752
Time course 36hI-36hNI0.798240.026
Time course 60hI-60hNI0.256560.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.930410.362
transgenic ySAMdc/azygous control (breaker)0.893830.49
transgenic ySAMdc/azygous control (red)1.101791

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.150840.096

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.09881

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.638150.09
Manapal/WT (break)1.027561
Manapal/WT (red)1.682060.164