Expression of 1-1-7.1.2.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.78227 | 0.11 |
27DAP/17DAP | 0.90357 | 0.822 |
39DAP/27DAP | 1.30959 | 0.699 |
41DAP/39DAP | 0.85515 | 0.47 |
42DAP/41DAP | 1.48257 | 0.691 |
43DAP/42DAP | 1.25866 | 0.714 |
47DAP/43DAP | 0.65437 | 0.133 |
52DAP/47DAP | 1.03226 | 0.984 |
57DAP/52DAP | 1.00002 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15513 | 0.097 |
17DAP/reference | 1.00628 | 0.957 |
27DAP/reference | 0.91321 | 0.176 |
39DAP/reference | 1.03435 | 0.816 |
41DAP/reference | 0.97435 | 0.667 |
42DAP/reference | 1.146 | 0.065 |
43DAP/reference | 1.03246 | 0.705 |
47DAP/reference | 0.96572 | 0.392 |
52DAP/reference | 0.95124 | 0.382 |
57DAP/reference | 1.03872 | 0.901 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98872 | 0.782 |
27DAP/17DAP | 1.01545 | 1 |
39DAP/27DAP | 0.9058 | 0.26 |
41DAP/39DAP | 1.09213 | 0.719 |
42DAP/41DAP | 0.89511 | 0.3 |
43DAP/42DAP | 1.67877 | 0.147 |
47DAP/43DAP | 0.95773 | 0.846 |
52DAP/47DAP | 0.98496 | 0.902 |
57DAP/52DAP | 0.9682 | 0.763 |
57DAP/7DAP | 0.84181 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.24244 | 0.088 |
17DAP/reference | 1.12355 | 0.244 |
27DAP/reference | 1.1207 | 0.551 |
39DAP/reference | 1.24709 | 0.107 |
41DAP/reference | 1.28816 | 0.028 |
42DAP/reference | 1.52634 | 0.024 |
43DAP/reference | 1.36871 | 0.012 |
47DAP/reference | 1.24733 | 0.025 |
52DAP/reference | 1.42839 | 0.058 |
57DAP/reference | 1.6202 | 0.1 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05571 | 0.62 |
17DAP/reference | 1.1466 | 0.415 |
27DAP/reference | 1.31582 | 0.029 |
39DAP/reference | 1.23467 | 0.213 |
41DAP/reference | 1.0216 | 1 |
42DAP/reference | 1.18369 | 0.108 |
43DAP/reference | 1.10106 | 1 |
47DAP/reference | 1.14032 | 0.043 |
52DAP/reference | 1.00912 | 0.761 |
57DAP/reference | 1.06297 | 0.477 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.42246 | 0.106 |
17DAP/reference | 2.06795 | 0.518 |
27DAP/reference | 1.73177 | 0.059 |
39DAP/reference | 1.21449 | 0.108 |
41DAP/reference | 1.19948 | 0.145 |
42DAP/reference | 1.5095 | 0.05 |
43DAP/reference | 1.50985 | 0.067 |
47DAP/reference | 1.26935 | 0.048 |
52DAP/reference | 1.07843 | 0.542 |
57DAP/reference | 1.1675 | 0.113 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.31495 | 0.034 |
26DAP/20DAP | 1.32863 | 0.177 |
34DAP/26DAP | 0.90099 | 0.777 |
51DAP/34DAP | 1.28361 | 0.066 |
52DAP/51DAP | 0.85936 | 1 |
53DAP/52DAP | 1.11033 | 0.944 |
55DAP/53DAP | 0.90649 | 0.604 |
57DAP/55DAP | 1.00257 | 0.94 |
62DAP/57DAP | 1.33881 | |
68DAP/62DAP | 0.9831 | |
68DAP/14DAP | 1.186 | 0.419 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.95611 | 0.493 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.77913 | 0.234 |
Mature Green Tomato/Ripe Tomato | 1.3686 | 0.086 |
Immature Eggplant/Mature Eggplant | 0.87311 | 0.407 |
Ripe Pepper/Ripe Tomato | 1.84717 | 0.258 |
Mature Eggplant/Ripe Tomato | 1.92891 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.01967 | 1 |
1-1-2/M82 | 1.15894 | 1 |
12-2/M82 | 0.97457 | 0.955 |
12-4/M82 | 1.26964 | 1 |
1-3/M82 | 1.63303 | 0.479 |
2-1-1/M82 | 0.73431 | 0.465 |
2-1/M82 | 0.43419 | |
2-6/M82 | 1.07958 | 1 |
3-2/M82 | 1.19288 | 0.967 |
4-1-1/M82 | 0.92379 | |
4-1/M82 | 1.50395 | 1 |
4-3-2/M82 | 1.3542 | |
4-3/M82 | 0.97353 | 1 |
5-3/M82 | 1.16129 | 0.572 |
6-2/M82 | 1.09227 | 1 |
6-3/M82 | 1.04578 | 1 |
7-1/M82 | 1.0469 | 1 |
7-2/M82 | 1.05166 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 2.21738 | 0.277 |
IL2-6/WTpooled | 1.02264 | 1 |
IL7-5/WTpooled | 0.77284 | 1 |
IL7-3/WTpooled | 6.85229 | 1 |
IL12-4/WTpooled | 1.9353 | 0.516 |
IL1-4/WTpooled | 3.0019 | 0.426 |
WT/WTpooled | 0.83921 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.9 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.77646 | 0.868 |
DC3000/delta hrp 6h | 1.23117 | 0.582 |
DC3000/delta hrp 12h | 0.87119 | 1 |
DC3000/delta hrp 24h | 0.73066 | 0.066 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.73415 | |
DC3000 delta B/DC3000 delta AB | 0.69532 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.00591 | 1 |
Exp 36h | 0.85502 | 0.623 |
Exp 60h | 0.86807 | 0.522 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96835 | 1 |
Var 0h | 1.12592 | 0.782 |
Var 12h I row2-row1 | 1.04682 | 0.795 |
Var 12h NI row2-row1 | 0.9648 | 0.394 |
Var 36h I row2-row1 | 1.03238 | 0.489 |
Var 36h NI row2-row1 | 1.41062 | 1 |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | 1.01698 | 1 |
Time course 0hI-0hNI | 1.02697 | 0.852 |
Time course 12hI-12hNI | 0.96216 | 0.742 |
Time course 36hI-36hNI | 0.93517 | 0.269 |
Time course 60hI-60hNI | 0.55228 | 0.007 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.10046 | 0.287 |
transgenic ySAMdc/azygous control (breaker) | 0.90055 | 0.142 |
transgenic ySAMdc/azygous control (red) | 1.0178 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.18152 | 0.033 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.29622 | 0.231 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.31052 | 0.14 |
Manapal/WT (break) | 1.80494 | 0.183 |
Manapal/WT (red) | 2.17362 | 0.134 |
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