TFGD
Home Expression Metabolite sRNA Links Contact

Expression of 1-1-7.1.2.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.782270.11
27DAP/17DAP0.903570.822
39DAP/27DAP1.309590.699
41DAP/39DAP0.855150.47
42DAP/41DAP1.482570.691
43DAP/42DAP1.258660.714
47DAP/43DAP0.654370.133
52DAP/47DAP1.032260.984
57DAP/52DAP1.000020.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.155130.097
17DAP/reference1.006280.957
27DAP/reference0.913210.176
39DAP/reference1.034350.816
41DAP/reference0.974350.667
42DAP/reference1.1460.065
43DAP/reference1.032460.705
47DAP/reference0.965720.392
52DAP/reference0.951240.382
57DAP/reference1.038720.901

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.988720.782
27DAP/17DAP1.015451
39DAP/27DAP0.90580.26
41DAP/39DAP1.092130.719
42DAP/41DAP0.895110.3
43DAP/42DAP1.678770.147
47DAP/43DAP0.957730.846
52DAP/47DAP0.984960.902
57DAP/52DAP0.96820.763
57DAP/7DAP0.841811

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.242440.088
17DAP/reference1.123550.244
27DAP/reference1.12070.551
39DAP/reference1.247090.107
41DAP/reference1.288160.028
42DAP/reference1.526340.024
43DAP/reference1.368710.012
47DAP/reference1.247330.025
52DAP/reference1.428390.058
57DAP/reference1.62020.1

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.055710.62
17DAP/reference1.14660.415
27DAP/reference1.315820.029
39DAP/reference1.234670.213
41DAP/reference1.02161
42DAP/reference1.183690.108
43DAP/reference1.101061
47DAP/reference1.140320.043
52DAP/reference1.009120.761
57DAP/reference1.062970.477

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.422460.106
17DAP/reference2.067950.518
27DAP/reference1.731770.059
39DAP/reference1.214490.108
41DAP/reference1.199480.145
42DAP/reference1.50950.05
43DAP/reference1.509850.067
47DAP/reference1.269350.048
52DAP/reference1.078430.542
57DAP/reference1.16750.113

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.314950.034
26DAP/20DAP1.328630.177
34DAP/26DAP0.900990.777
51DAP/34DAP1.283610.066
52DAP/51DAP0.859361
53DAP/52DAP1.110330.944
55DAP/53DAP0.906490.604
57DAP/55DAP1.002570.94
62DAP/57DAP1.33881N/A
68DAP/62DAP0.9831N/A
68DAP/14DAP1.1860.419

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.956110.493

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.779130.234
Mature Green Tomato/Ripe Tomato1.36860.086
Immature Eggplant/Mature Eggplant0.873110.407
Ripe Pepper/Ripe Tomato1.847170.258
Mature Eggplant/Ripe Tomato1.928910.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.019671
1-1-2/M821.158941
12-2/M820.974570.955
12-4/M821.269641
1-3/M821.633030.479
2-1-1/M820.734310.465
2-1/M820.43419N/A
2-6/M821.079581
3-2/M821.192880.967
4-1-1/M820.92379N/A
4-1/M821.503951
4-3-2/M821.3542N/A
4-3/M820.973531
5-3/M821.161290.572
6-2/M821.092271
6-3/M821.045781
7-1/M821.04691
7-2/M821.051661
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled2.217380.277
IL2-6/WTpooled1.022641
IL7-5/WTpooled0.772841
IL7-3/WTpooled6.852291
IL12-4/WTpooled1.93530.516
IL1-4/WTpooled3.00190.426
WT/WTpooled0.839211

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.90.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.776460.868
DC3000/delta hrp 6h1.231170.582
DC3000/delta hrp 12h0.871191
DC3000/delta hrp 24h0.730660.066

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.73415N/A
DC3000 delta B/DC3000 delta AB0.695320.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.005911
Exp 36h0.855020.623
Exp 60h0.868070.522

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.968351
Var 0h1.125920.782
Var 12h I row2-row11.046820.795
Var 12h NI row2-row10.96480.394
Var 36h I row2-row11.032380.489
Var 36h NI row2-row11.410621
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row11.016981
Time course 0hI-0hNI1.026970.852
Time course 12hI-12hNI0.962160.742
Time course 36hI-36hNI0.935170.269
Time course 60hI-60hNI0.552280.007

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.100460.287
transgenic ySAMdc/azygous control (breaker)0.900550.142
transgenic ySAMdc/azygous control (red)1.01780.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.181520.033

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.296220.231

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.310520.14
Manapal/WT (break)1.804940.183
Manapal/WT (red)2.173620.134