Expression of 1-1-7.2.12.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09438 | 0.951 |
27DAP/17DAP | 1.23641 | 0.849 |
39DAP/27DAP | 1.02507 | 0.857 |
41DAP/39DAP | 0.93876 | 0.791 |
42DAP/41DAP | 0.96808 | 1 |
43DAP/42DAP | 1.00613 | 0.937 |
47DAP/43DAP | 0.91347 | 0.696 |
52DAP/47DAP | 1.59504 | 0.593 |
57DAP/52DAP | 1.30983 | 0.735 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0269 | 0.846 |
17DAP/reference | 1.02314 | 0.74 |
27DAP/reference | 0.95437 | 0.406 |
39DAP/reference | 0.94071 | 0.36 |
41DAP/reference | 1.04796 | 0.312 |
42DAP/reference | 0.96659 | 0.099 |
43DAP/reference | 1.03846 | 0.547 |
47DAP/reference | 0.97335 | 0.3 |
52DAP/reference | 1.03319 | 0.453 |
57DAP/reference | 0.91976 | 0.118 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94021 | 0.613 |
27DAP/17DAP | 1.51066 | 0.187 |
39DAP/27DAP | 0.871 | 0.477 |
41DAP/39DAP | 1.29809 | 0.79 |
42DAP/41DAP | 0.91577 | 0.556 |
43DAP/42DAP | 1.16853 | 0.746 |
47DAP/43DAP | 0.81803 | 0.195 |
52DAP/47DAP | 0.94095 | 0.899 |
57DAP/52DAP | 1.49265 | 0.224 |
57DAP/7DAP | 1.13031 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84935 | 0.224 |
17DAP/reference | 0.94872 | 0.253 |
27DAP/reference | 1.18798 | 0.371 |
39DAP/reference | 0.87294 | 0.146 |
41DAP/reference | 0.90816 | 0.194 |
42DAP/reference | 0.96729 | 0.436 |
43DAP/reference | 1.01907 | 1 |
47DAP/reference | 0.9042 | 0.128 |
52DAP/reference | 1.27003 | 0.159 |
57DAP/reference | 0.95669 | 0.367 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10747 | 0.201 |
17DAP/reference | 1.10679 | 0.348 |
27DAP/reference | 1.12599 | 0.373 |
39DAP/reference | 1.08941 | 0.514 |
41DAP/reference | 1.11176 | 0.459 |
42DAP/reference | 1.02101 | 1 |
43DAP/reference | 1.27931 | 0.208 |
47DAP/reference | 0.94717 | 0.261 |
52DAP/reference | 1.10495 | 0.041 |
57DAP/reference | 1.09957 | 0.409 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87421 | 0.135 |
17DAP/reference | 0.91844 | 0.262 |
27DAP/reference | 1.07063 | 0.34 |
39DAP/reference | 0.96585 | 0.393 |
41DAP/reference | 0.97416 | 0.56 |
42DAP/reference | 0.99902 | 0.816 |
43DAP/reference | 0.98883 | 0.685 |
47DAP/reference | 0.89993 | 0.041 |
52DAP/reference | 0.85975 | 0.238 |
57DAP/reference | 0.98948 | 0.672 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.74578 | 0.566 |
26DAP/20DAP | 0.82639 | 1 |
34DAP/26DAP | 1.30659 | 0.542 |
51DAP/34DAP | 1.00307 | 0.901 |
52DAP/51DAP | 1.07174 | 0.965 |
53DAP/52DAP | 1.12551 | 0.921 |
55DAP/53DAP | 0.89047 | 0.619 |
57DAP/55DAP | 0.78301 | 0.391 |
62DAP/57DAP | 1.29223 | 0.047 |
68DAP/62DAP | 1.09996 | 0.863 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.56445 | 0.032 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.9457 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.04313 | 1 |
IL2-6/WTpooled | 0.91775 | 0.383 |
IL7-5/WTpooled | 0.9099 | 1 |
IL7-3/WTpooled | 1.12078 | 1 |
IL12-4/WTpooled | 1.12056 | 0.737 |
IL1-4/WTpooled | 1.1416 | 1 |
WT/WTpooled | 0.97342 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.00937 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99521 | 1 |
DC3000/delta hrp 6h | 1.12949 | 1 |
DC3000/delta hrp 12h | 1.01481 | 1 |
DC3000/delta hrp 24h | 1.07108 | 0.502 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.67687 | 0.025 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.98003 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9389 | |
Var 0h | 1.30007 | 0.936 |
Var 12h I row2-row1 | 0.82588 | 0.39 |
Var 12h NI row2-row1 | 0.87422 | 0.713 |
Var 36h I row2-row1 | 0.79028 | 0.575 |
Var 36h NI row2-row1 | 0.74063 | 0.852 |
Var 60h I row2-row1 | 1.26034 | |
Var 60h NI row2-row1 | 1.08857 | 0.904 |
Time course 0hI-0hNI | 1.06695 | 0.719 |
Time course 12hI-12hNI | 0.97475 | 0.858 |
Time course 36hI-36hNI | 0.8533 | 0.097 |
Time course 60hI-60hNI | 0.18745 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.9608 | 0.454 |
transgenic ySAMdc/azygous control (breaker) | 1.21596 | 0.248 |
transgenic ySAMdc/azygous control (red) | 0.93381 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.95239 | 0.153 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.42158 | 0.229 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.02338 | 1 |
Manapal/WT (break) | 1.06618 | 1 |
Manapal/WT (red) | 0.95602 | 0.728 |
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