Expression of 1-1-7.2.12.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.094380.951
27DAP/17DAP1.236410.849
39DAP/27DAP1.025070.857
41DAP/39DAP0.938760.791
42DAP/41DAP0.968081
43DAP/42DAP1.006130.937
47DAP/43DAP0.913470.696
52DAP/47DAP1.595040.593
57DAP/52DAP1.309830.735

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.02690.846
17DAP/reference1.023140.74
27DAP/reference0.954370.406
39DAP/reference0.940710.36
41DAP/reference1.047960.312
42DAP/reference0.966590.099
43DAP/reference1.038460.547
47DAP/reference0.973350.3
52DAP/reference1.033190.453
57DAP/reference0.919760.118

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.940210.613
27DAP/17DAP1.510660.187
39DAP/27DAP0.8710.477
41DAP/39DAP1.298090.79
42DAP/41DAP0.915770.556
43DAP/42DAP1.168530.746
47DAP/43DAP0.818030.195
52DAP/47DAP0.940950.899
57DAP/52DAP1.492650.224
57DAP/7DAP1.13031

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.849350.224
17DAP/reference0.948720.253
27DAP/reference1.187980.371
39DAP/reference0.872940.146
41DAP/reference0.908160.194
42DAP/reference0.967290.436
43DAP/reference1.019071
47DAP/reference0.90420.128
52DAP/reference1.270030.159
57DAP/reference0.956690.367

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.107470.201
17DAP/reference1.106790.348
27DAP/reference1.125990.373
39DAP/reference1.089410.514
41DAP/reference1.111760.459
42DAP/reference1.021011
43DAP/reference1.279310.208
47DAP/reference0.947170.261
52DAP/reference1.104950.041
57DAP/reference1.099570.409

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.874210.135
17DAP/reference0.918440.262
27DAP/reference1.070630.34
39DAP/reference0.965850.393
41DAP/reference0.974160.56
42DAP/reference0.999020.816
43DAP/reference0.988830.685
47DAP/reference0.899930.041
52DAP/reference0.859750.238
57DAP/reference0.989480.672

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.745780.566
26DAP/20DAP0.826391
34DAP/26DAP1.306590.542
51DAP/34DAP1.003070.901
52DAP/51DAP1.071740.965
53DAP/52DAP1.125510.921
55DAP/53DAP0.890470.619
57DAP/55DAP0.783010.391
62DAP/57DAP1.292230.047
68DAP/62DAP1.099960.863
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.564450.032

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M820.9457
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.043131
IL2-6/WTpooled0.917750.383
IL7-5/WTpooled0.90991
IL7-3/WTpooled1.120781
IL12-4/WTpooled1.120560.737
IL1-4/WTpooled1.14161
WT/WTpooled0.973421

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.009371

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.995211
DC3000/delta hrp 6h1.129491
DC3000/delta hrp 12h1.014811
DC3000/delta hrp 24h1.071080.502

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.676870.025

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.980031
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.9389
Var 0h1.300070.936
Var 12h I row2-row10.825880.39
Var 12h NI row2-row10.874220.713
Var 36h I row2-row10.790280.575
Var 36h NI row2-row10.740630.852
Var 60h I row2-row11.26034
Var 60h NI row2-row11.088570.904
Time course 0hI-0hNI1.066950.719
Time course 12hI-12hNI0.974750.858
Time course 36hI-36hNI0.85330.097
Time course 60hI-60hNI0.187450.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.96080.454
transgenic ySAMdc/azygous control (breaker)1.215960.248
transgenic ySAMdc/azygous control (red)0.933811

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.952390.153

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.421580.229

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.023381
Manapal/WT (break)1.066181
Manapal/WT (red)0.956020.728