Expression of 1-1-7.2.15.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94316 | 0.596 |
27DAP/17DAP | 1.0607 | 0.883 |
39DAP/27DAP | 1.05465 | 0.965 |
41DAP/39DAP | 1.02386 | 0.88 |
42DAP/41DAP | 0.86383 | 1 |
43DAP/42DAP | 1.02955 | 1 |
47DAP/43DAP | 1.00447 | 0.98 |
52DAP/47DAP | 0.86807 | 0.633 |
57DAP/52DAP | 0.97572 | 0.94 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.37545 | 0.007 |
17DAP/reference | 1.13952 | 0.018 |
27DAP/reference | 1.19793 | 0.019 |
39DAP/reference | 1.24314 | 0.029 |
41DAP/reference | 1.32163 | 0.013 |
42DAP/reference | 1.39422 | 0.001 |
43DAP/reference | 1.16364 | 0.287 |
47DAP/reference | 1.32241 | 0.001 |
52DAP/reference | 1.52163 | 0.01 |
57DAP/reference | 1.27611 | 0.039 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91818 | 0.442 |
27DAP/17DAP | 1.07157 | |
39DAP/27DAP | 1.11485 | 0.483 |
41DAP/39DAP | 1.04926 | 0.876 |
42DAP/41DAP | 1.0004 | 0.936 |
43DAP/42DAP | 1.07956 | 0.297 |
47DAP/43DAP | 0.99049 | 0.971 |
52DAP/47DAP | 1.09925 | 0.656 |
57DAP/52DAP | 0.87572 | 0.169 |
57DAP/7DAP | 0.95952 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11297 | 0.555 |
17DAP/reference | 1.02609 | 1 |
27DAP/reference | 1.04303 | 0.804 |
39DAP/reference | 1.11517 | 0.669 |
41DAP/reference | 0.91542 | 0.259 |
42DAP/reference | 1.01708 | 0.751 |
43DAP/reference | 1.14416 | 0.637 |
47DAP/reference | 1.2615 | 0.068 |
52DAP/reference | 1.06183 | 0.428 |
57DAP/reference | 0.97835 | 0.477 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.33189 | 0.154 |
17DAP/reference | 1.65574 | 0.023 |
27DAP/reference | 1.62596 | 0.04 |
39DAP/reference | 1.57504 | 0.011 |
41DAP/reference | 1.80904 | 0.005 |
42DAP/reference | 1.5013 | 0.013 |
43DAP/reference | 1.77327 | 0.02 |
47DAP/reference | 1.31457 | 0.008 |
52DAP/reference | 1.61815 | 0.006 |
57DAP/reference | 1.47899 | 0.012 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95222 | 0.422 |
17DAP/reference | 1.1203 | 0.212 |
27DAP/reference | 0.96424 | 0.465 |
39DAP/reference | 1.09468 | 0.227 |
41DAP/reference | 1.15985 | 0.115 |
42DAP/reference | 1.15164 | 0.49 |
43DAP/reference | 1.34383 | 0.205 |
47DAP/reference | 1.15718 | 0.324 |
52DAP/reference | 1.00292 | 0.871 |
57DAP/reference | 1.27165 | 0.371 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.05621 | 0.966 |
26DAP/20DAP | 0.89455 | 0.512 |
34DAP/26DAP | 1.00825 | 1 |
51DAP/34DAP | 1.10295 | 0.126 |
52DAP/51DAP | 1.03795 | 0.708 |
53DAP/52DAP | 1.0465 | 0.882 |
55DAP/53DAP | 1.06561 | 0.911 |
57DAP/55DAP | 1.4526 | 0.71 |
62DAP/57DAP | 0.73858 | 0.28 |
68DAP/62DAP | 0.78974 | 0.464 |
68DAP/14DAP | 0.88111 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.87724 | 0.042 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.23425 | 0.113 |
Mature Green Tomato/Ripe Tomato | 1.07534 | 0.948 |
Immature Eggplant/Mature Eggplant | 1.20309 | 0.267 |
Ripe Pepper/Ripe Tomato | 0.64617 | 1 |
Mature Eggplant/Ripe Tomato | 1.09794 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.98426 | 0.961 |
1-1-2/M82 | 0.99972 | 1 |
12-2/M82 | 0.96855 | 0.955 |
12-4/M82 | 0.92067 | 0.358 |
1-3/M82 | 0.92165 | 0.378 |
2-1-1/M82 | 1.15508 | 0.764 |
2-1/M82 | 1.41972 | 0.345 |
2-6/M82 | 0.97245 | 1 |
3-2/M82 | 0.97829 | 0.752 |
4-1-1/M82 | 1.04119 | 1 |
4-1/M82 | 1.0234 | 1 |
4-3-2/M82 | 0.9366 | 0.698 |
4-3/M82 | 1.13393 | 1 |
5-3/M82 | 1.12996 | 1 |
6-2/M82 | 1.06732 | 1 |
6-3/M82 | 1.00546 | 1 |
7-1/M82 | 1.05632 | 0.87 |
7-2/M82 | 1.11179 | 1 |
9-3-2/M82 | 1.00487 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.32082 | 0.419 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.01478 | 1 |
IL12-4/WTpooled | 0.96566 | 1 |
IL1-4/WTpooled | 0.96209 | |
WT/WTpooled | 1.01663 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.9159 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03329 | 0.846 |
DC3000/delta hrp 6h | 1.18379 | 1 |
DC3000/delta hrp 12h | 1.04242 | 1 |
DC3000/delta hrp 24h | 1.04138 | 0.582 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.08442 | |
DC3000 delta B/DC3000 delta AB | 1.21334 | 0.204 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.99131 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 0.76192 | 0.278 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01124 | 1 |
Var 0h | 1.48329 | 0.98 |
Var 12h I row2-row1 | 1.0542 | 0.613 |
Var 12h NI row2-row1 | 1.01022 | 1 |
Var 36h I row2-row1 | 1.0629 | 1 |
Var 36h NI row2-row1 | 1.13942 | 1 |
Var 60h I row2-row1 | 0.9982 | 1 |
Var 60h NI row2-row1 | 1.19819 | 0.904 |
Time course 0hI-0hNI | 1.05125 | 0.867 |
Time course 12hI-12hNI | 1.0283 | 0.861 |
Time course 36hI-36hNI | 0.89843 | 0.123 |
Time course 60hI-60hNI | 0.89634 | 0.161 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.01701 | 0.748 |
transgenic ySAMdc/azygous control (breaker) | 1.32359 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.2353 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.89928 | 0.052 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.21084 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.8733 | 1 |
Manapal/WT (break) | 1.24005 | 1 |
Manapal/WT (red) | 0.95142 | 0.728 |
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