Expression of 1-1-7.2.15.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.943160.596
27DAP/17DAP1.06070.883
39DAP/27DAP1.054650.965
41DAP/39DAP1.023860.88
42DAP/41DAP0.863831
43DAP/42DAP1.029551
47DAP/43DAP1.004470.98
52DAP/47DAP0.868070.633
57DAP/52DAP0.975720.94

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.375450.007
17DAP/reference1.139520.018
27DAP/reference1.197930.019
39DAP/reference1.243140.029
41DAP/reference1.321630.013
42DAP/reference1.394220.001
43DAP/reference1.163640.287
47DAP/reference1.322410.001
52DAP/reference1.521630.01
57DAP/reference1.276110.039

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.918180.442
27DAP/17DAP1.07157
39DAP/27DAP1.114850.483
41DAP/39DAP1.049260.876
42DAP/41DAP1.00040.936
43DAP/42DAP1.079560.297
47DAP/43DAP0.990490.971
52DAP/47DAP1.099250.656
57DAP/52DAP0.875720.169
57DAP/7DAP0.959521

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.112970.555
17DAP/reference1.026091
27DAP/reference1.043030.804
39DAP/reference1.115170.669
41DAP/reference0.915420.259
42DAP/reference1.017080.751
43DAP/reference1.144160.637
47DAP/reference1.26150.068
52DAP/reference1.061830.428
57DAP/reference0.978350.477

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.331890.154
17DAP/reference1.655740.023
27DAP/reference1.625960.04
39DAP/reference1.575040.011
41DAP/reference1.809040.005
42DAP/reference1.50130.013
43DAP/reference1.773270.02
47DAP/reference1.314570.008
52DAP/reference1.618150.006
57DAP/reference1.478990.012

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.952220.422
17DAP/reference1.12030.212
27DAP/reference0.964240.465
39DAP/reference1.094680.227
41DAP/reference1.159850.115
42DAP/reference1.151640.49
43DAP/reference1.343830.205
47DAP/reference1.157180.324
52DAP/reference1.002920.871
57DAP/reference1.271650.371

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.056210.966
26DAP/20DAP0.894550.512
34DAP/26DAP1.008251
51DAP/34DAP1.102950.126
52DAP/51DAP1.037950.708
53DAP/52DAP1.04650.882
55DAP/53DAP1.065610.911
57DAP/55DAP1.45260.71
62DAP/57DAP0.738580.28
68DAP/62DAP0.789740.464
68DAP/14DAP0.881111

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.877240.042

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.234250.113
Mature Green Tomato/Ripe Tomato1.075340.948
Immature Eggplant/Mature Eggplant1.203090.267
Ripe Pepper/Ripe Tomato0.646171
Mature Eggplant/Ripe Tomato1.097941

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.984260.961
1-1-2/M820.999721
12-2/M820.968550.955
12-4/M820.920670.358
1-3/M820.921650.378
2-1-1/M821.155080.764
2-1/M821.419720.345
2-6/M820.972451
3-2/M820.978290.752
4-1-1/M821.041191
4-1/M821.02341
4-3-2/M820.93660.698
4-3/M821.133931
5-3/M821.129961
6-2/M821.067321
6-3/M821.005461
7-1/M821.056320.87
7-2/M821.111791
9-3-2/M821.004871

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.320820.419
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.014781
IL12-4/WTpooled0.965661
IL1-4/WTpooled0.96209
WT/WTpooled1.016631

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.91591

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.033290.846
DC3000/delta hrp 6h1.183791
DC3000/delta hrp 12h1.042421
DC3000/delta hrp 24h1.041380.582

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.08442
DC3000 delta B/DC3000 delta AB1.213340.204

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.991311
Exp 36hN/AN/A
Exp 60h0.761920.278

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.011241
Var 0h1.483290.98
Var 12h I row2-row11.05420.613
Var 12h NI row2-row11.010221
Var 36h I row2-row11.06291
Var 36h NI row2-row11.139421
Var 60h I row2-row10.99821
Var 60h NI row2-row11.198190.904
Time course 0hI-0hNI1.051250.867
Time course 12hI-12hNI1.02830.861
Time course 36hI-36hNI0.898430.123
Time course 60hI-60hNI0.896340.161

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.017010.748
transgenic ySAMdc/azygous control (breaker)1.323590.248
transgenic ySAMdc/azygous control (red)1.23530.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.899280.052

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.210840.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.87331
Manapal/WT (break)1.240051
Manapal/WT (red)0.951420.728