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Expression of 1-1-7.2.19.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.231721
27DAP/17DAP1.151380.872
39DAP/27DAP1.242910.857
41DAP/39DAP0.949510.761
42DAP/41DAP1.069741
43DAP/42DAP1.154891
47DAP/43DAP1.098110.926
52DAP/47DAP0.85070.6
57DAP/52DAP1.032950.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.521440.011
17DAP/reference1.372660.032
27DAP/reference1.3030.156
39DAP/reference1.169280.343
41DAP/reference1.857840.013
42DAP/reference1.489540.001
43DAP/reference1.238230.287
47DAP/reference1.367810.001
52DAP/reference1.541760.012
57DAP/reference1.207070.447

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.060610.515
27DAP/17DAP0.965410.854
39DAP/27DAP0.996741
41DAP/39DAP0.923820.747
42DAP/41DAP1.212380.308
43DAP/42DAP1.066540.627
47DAP/43DAP0.946740.701
52DAP/47DAP1.051220.831
57DAP/52DAP0.97310.709
57DAP/7DAP1.08661

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.908460.246
17DAP/reference0.920970.22
27DAP/reference0.777330.013
39DAP/reference0.695180.025
41DAP/reference0.809110.107
42DAP/reference0.796330.03
43DAP/reference0.725530.013
47DAP/reference1.101440.732
52DAP/reference0.672630.013
57DAP/reference0.763820.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.453820.054
17DAP/reference1.613930.037
27DAP/reference1.516140.076
39DAP/reference1.638510.011
41DAP/reference1.712860.005
42DAP/reference1.607240.009
43DAP/reference1.733630.07
47DAP/reference1.400750.008
52DAP/reference1.722740.006
57DAP/reference1.532550.016

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.951280.489
17DAP/reference0.939960.519
27DAP/reference0.782680.038
39DAP/reference0.856190.179
41DAP/reference0.876690.293
42DAP/reference0.879530.22
43DAP/reference1.128751
47DAP/reference1.391460.037
52DAP/reference0.932910.529
57DAP/reference0.915570.372

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.001711
26DAP/20DAP1.111070.62
34DAP/26DAP0.952090.841
51DAP/34DAP1.28510.164
52DAP/51DAP1.022490.873
53DAP/52DAP1.335340.058
55DAP/53DAP0.770780.022
57DAP/55DAP0.975190.828
62DAP/57DAP0.979890.994
68DAP/62DAP0.993260.787
68DAP/14DAP0.597530.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.114760.591

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.641350.038
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.15313N/A
Mature Eggplant/Ripe Tomato0.208910.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.502450.574
1-1-2/M821.117821
12-2/M820.770780.955
12-4/M821.145961
1-3/M8210.15450.248
2-1-1/M821.565150.457
2-1/M821.46960.345
2-6/M820.889661
3-2/M822.39797N/A
4-1-1/M821.296121
4-1/M821.74120.853
4-3-2/M821.132051
4-3/M821.41481
5-3/M820.983131
6-2/M821.089611
6-3/M821.063691
7-1/M820.949750.803
7-2/M821.245161
9-3-2/M821.391311

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.517960.277
IL2-6/WTpooled1.00996N/A
IL7-5/WTpooled1.21070.792
IL7-3/WTpooled1.241451
IL12-4/WTpooled0.897591
IL1-4/WTpooled0.94762N/A
WT/WTpooled0.932041

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.992741

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.976451
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.190211
DC3000/delta hrp 24h0.690370.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.75730.024
DC3000 delta B/DC3000 delta AB0.710840.021

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h0.74020.32

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.033171
Var 0h1.205080.98
Var 12h I row2-row10.847260.357
Var 12h NI row2-row11.007971
Var 36h I row2-row10.979261
Var 36h NI row2-row11.031731
Var 60h I row2-row10.778310.374
Var 60h NI row2-row11.018511
Time course 0hI-0hNI1.021381
Time course 12hI-12hNI1.112410.327
Time course 36hI-36hNI1.081330.722
Time course 60hI-60hNI1.260950.06

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)1.179431
transgenic ySAMdc/azygous control (red)1.039970.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.839290.058

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.192731

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.032761
Manapal/WT (red)0.487310.184