Expression of 1-1-7.2.2.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.142340.728
27DAP/17DAP0.653690.836
39DAP/27DAP1.812850.26
41DAP/39DAP1.129610.426
42DAP/41DAP1.034371
43DAP/42DAP1.295850.746
47DAP/43DAP1.440450.68
52DAP/47DAP1.483380.671
57DAP/52DAP1.433350.826

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.852770.402
17DAP/reference0.40739
27DAP/referenceN/AN/A
39DAP/referenceN/AN/A
41DAP/reference1.228910.808
42DAP/reference0.911040.067
43DAP/reference0.86633
47DAP/reference1.289650.012
52DAP/reference1.125830.878
57DAP/reference0.970030.61

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.878320.311
27DAP/17DAP1.028460.96
39DAP/27DAP1.008421
41DAP/39DAP1.292090.799
42DAP/41DAP1.385830.593
43DAP/42DAP1.161170.83
47DAP/43DAP1.857450.5
52DAP/47DAP1.305470.439
57DAP/52DAP1.572990.457
57DAP/7DAP0.969451

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.254530.039
17DAP/reference0.399530.012
27DAP/reference0.40190.01
39DAP/reference0.347890.011
41DAP/reference0.41690.011
42DAP/reference0.385570.01
43DAP/reference0.434420.01
47DAP/reference0.310310.032
52DAP/reference0.373350.011
57DAP/reference0.585090.016

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.084610.724
17DAP/reference0.77934
27DAP/reference0.918970.537
39DAP/referenceN/AN/A
41DAP/reference1.548010.562
42DAP/referenceN/AN/A
43DAP/reference1.186450.103
47DAP/referenceN/AN/A
52DAP/reference1.85961
57DAP/reference1.221290.916

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.41160.019
17DAP/reference0.909080.528
27DAP/reference0.420280.025
39DAP/reference0.477970.022
41DAP/reference0.410550.019
42DAP/reference0.454580.015
43DAP/reference0.45760.016
47DAP/referenceN/AN/A
52DAP/reference0.718570.262
57DAP/reference0.996650.779

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAPN/AN/A
26DAP/20DAPN/AN/A
34DAP/26DAP1.193181
51DAP/34DAP0.876020.758
52DAP/51DAP0.558241
53DAP/52DAP1.041410.921
55DAP/53DAP0.70948
57DAP/55DAPN/AN/A
62DAP/57DAPN/AN/A
68DAP/62DAPN/AN/A
68DAP/14DAP1.64021

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.203280.527

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.69681
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.38531
WT/WTpooled1.018011

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A