Expression of 1-1-7.2.2.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.14234 | 0.728 |
27DAP/17DAP | 0.65369 | 0.836 |
39DAP/27DAP | 1.81285 | 0.26 |
41DAP/39DAP | 1.12961 | 0.426 |
42DAP/41DAP | 1.03437 | 1 |
43DAP/42DAP | 1.29585 | 0.746 |
47DAP/43DAP | 1.44045 | 0.68 |
52DAP/47DAP | 1.48338 | 0.671 |
57DAP/52DAP | 1.43335 | 0.826 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85277 | 0.402 |
17DAP/reference | 0.40739 | |
27DAP/reference | N/A | N/A |
39DAP/reference | N/A | N/A |
41DAP/reference | 1.22891 | 0.808 |
42DAP/reference | 0.91104 | 0.067 |
43DAP/reference | 0.86633 | |
47DAP/reference | 1.28965 | 0.012 |
52DAP/reference | 1.12583 | 0.878 |
57DAP/reference | 0.97003 | 0.61 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.87832 | 0.311 |
27DAP/17DAP | 1.02846 | 0.96 |
39DAP/27DAP | 1.00842 | 1 |
41DAP/39DAP | 1.29209 | 0.799 |
42DAP/41DAP | 1.38583 | 0.593 |
43DAP/42DAP | 1.16117 | 0.83 |
47DAP/43DAP | 1.85745 | 0.5 |
52DAP/47DAP | 1.30547 | 0.439 |
57DAP/52DAP | 1.57299 | 0.457 |
57DAP/7DAP | 0.96945 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.25453 | 0.039 |
17DAP/reference | 0.39953 | 0.012 |
27DAP/reference | 0.4019 | 0.01 |
39DAP/reference | 0.34789 | 0.011 |
41DAP/reference | 0.4169 | 0.011 |
42DAP/reference | 0.38557 | 0.01 |
43DAP/reference | 0.43442 | 0.01 |
47DAP/reference | 0.31031 | 0.032 |
52DAP/reference | 0.37335 | 0.011 |
57DAP/reference | 0.58509 | 0.016 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08461 | 0.724 |
17DAP/reference | 0.77934 | |
27DAP/reference | 0.91897 | 0.537 |
39DAP/reference | N/A | N/A |
41DAP/reference | 1.54801 | 0.562 |
42DAP/reference | N/A | N/A |
43DAP/reference | 1.18645 | 0.103 |
47DAP/reference | N/A | N/A |
52DAP/reference | 1.8596 | 1 |
57DAP/reference | 1.22129 | 0.916 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.4116 | 0.019 |
17DAP/reference | 0.90908 | 0.528 |
27DAP/reference | 0.42028 | 0.025 |
39DAP/reference | 0.47797 | 0.022 |
41DAP/reference | 0.41055 | 0.019 |
42DAP/reference | 0.45458 | 0.015 |
43DAP/reference | 0.4576 | 0.016 |
47DAP/reference | N/A | N/A |
52DAP/reference | 0.71857 | 0.262 |
57DAP/reference | 0.99665 | 0.779 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | N/A | N/A |
26DAP/20DAP | N/A | N/A |
34DAP/26DAP | 1.19318 | 1 |
51DAP/34DAP | 0.87602 | 0.758 |
52DAP/51DAP | 0.55824 | 1 |
53DAP/52DAP | 1.04141 | 0.921 |
55DAP/53DAP | 0.70948 | |
57DAP/55DAP | N/A | N/A |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | N/A | N/A |
68DAP/14DAP | 1.64021 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.20328 | 0.527 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.69681 | |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 1.3853 | 1 |
WT/WTpooled | 1.01801 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | N/A | N/A |
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