Expression of 1-1-7.2.8.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.80174 | 0.052 |
27DAP/17DAP | 1.08194 | 0.872 |
39DAP/27DAP | 1.70966 | 0.212 |
41DAP/39DAP | 1.10934 | 0.844 |
42DAP/41DAP | 0.81165 | 0.774 |
43DAP/42DAP | 1.06394 | 1 |
47DAP/43DAP | 0.70988 | 0.156 |
52DAP/47DAP | 2.12729 | 0.251 |
57DAP/52DAP | 1.10733 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87264 | 0.217 |
17DAP/reference | 0.9867 | 0.777 |
27DAP/reference | 0.97222 | 0.61 |
39DAP/reference | 0.96425 | 0.638 |
41DAP/reference | 0.97344 | 0.667 |
42DAP/reference | 0.90973 | 0.233 |
43DAP/reference | 1.23501 | 0.617 |
47DAP/reference | 0.8224 | 0.065 |
52DAP/reference | 1.23216 | 0.069 |
57DAP/reference | 1.13957 | 0.195 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.71795 | 0.105 |
27DAP/17DAP | 0.93655 | 0.748 |
39DAP/27DAP | 1.6683 | 0.08 |
41DAP/39DAP | 1.14124 | 0.997 |
42DAP/41DAP | 1.29038 | 0.042 |
43DAP/42DAP | 1.44925 | 0.02 |
47DAP/43DAP | 1.05495 | 0.817 |
52DAP/47DAP | 0.55227 | 0.034 |
57DAP/52DAP | 1.20175 | 0.204 |
57DAP/7DAP | 1.30656 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05674 | 0.83 |
17DAP/reference | 1.3715 | 0.01 |
27DAP/reference | 1.28027 | 0.131 |
39DAP/reference | 1.48505 | 0.05 |
41DAP/reference | 1.17864 | 0.232 |
42DAP/reference | 1.4314 | 0.014 |
43DAP/reference | 1.32074 | 0.093 |
47DAP/reference | 1.11073 | 0.582 |
52DAP/reference | 1.40724 | 0.021 |
57DAP/reference | 1.55161 | 0.005 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98796 | 0.831 |
17DAP/reference | 0.86013 | 0.378 |
27DAP/reference | 1.03774 | 0.933 |
39DAP/reference | 1.364 | 0.023 |
41DAP/reference | 1.15189 | 0.394 |
42DAP/reference | 1.09651 | 0.18 |
43DAP/reference | 0.94975 | 0.486 |
47DAP/reference | 1.01442 | 0.77 |
52DAP/reference | 0.8681 | 0.131 |
57DAP/reference | 0.94903 | 0.46 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02212 | 0.804 |
17DAP/reference | 0.92746 | 0.381 |
27DAP/reference | 1.03736 | 0.805 |
39DAP/reference | 1.01626 | 0.889 |
41DAP/reference | 0.90612 | 0.417 |
42DAP/reference | 0.86187 | 0.361 |
43DAP/reference | 1.10147 | 0.667 |
47DAP/reference | 0.83015 | 0.168 |
52DAP/reference | 1.40904 | 0.542 |
57DAP/reference | 1.06656 | 0.947 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.49254 | 0.878 |
26DAP/20DAP | 0.99747 | 1 |
34DAP/26DAP | 1.02034 | 1 |
51DAP/34DAP | 1.38996 | 0.059 |
52DAP/51DAP | 0.66095 | 0.151 |
53DAP/52DAP | 2.27973 | 0.039 |
55DAP/53DAP | 0.62584 | 0.022 |
57DAP/55DAP | 0.92063 | 0.703 |
62DAP/57DAP | 0.82743 | 0.466 |
68DAP/62DAP | 1.44455 | 0.316 |
68DAP/14DAP | 1.08247 | 0.87 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 4.35977 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.68812 | 0.072 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 0.72355 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.90781 | 0.804 |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.32877 | 1 |
1-3/M82 | 1.84821 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.04511 | 0.512 |
4-3-2/M82 | 1.55345 | 0.284 |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.58655 | |
6-2/M82 | 1.32871 | |
6-3/M82 | 1.12904 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.51602 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.30009 | |
IL2-6/WTpooled | 1.14102 | 0.531 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.05901 | 1 |
IL12-4/WTpooled | 0.99402 | 1 |
IL1-4/WTpooled | 1.5689 | 1 |
WT/WTpooled | 0.88332 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.17679 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.54659 | |
DC3000/delta hrp 6h | 1.53218 | |
DC3000/delta hrp 12h | 1.29422 | 1 |
DC3000/delta hrp 24h | 1.43995 | 0.041 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.62057 | 0.162 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 1.15941 | 0.326 |
Exp 60h | 1.73614 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02294 | 1 |
Var 0h | 1.01642 | 1 |
Var 12h I row2-row1 | 1.01808 | 0.544 |
Var 12h NI row2-row1 | 1.03124 | 1 |
Var 36h I row2-row1 | 1.2027 | 0.41 |
Var 36h NI row2-row1 | 1.12373 | 0.482 |
Var 60h I row2-row1 | 0.83296 | 0.285 |
Var 60h NI row2-row1 | 0.8458 | 0.408 |
Time course 0hI-0hNI | 1.16697 | 0.344 |
Time course 12hI-12hNI | 1.23878 | 0.009 |
Time course 36hI-36hNI | 1.55619 | 0.005 |
Time course 60hI-60hNI | 2.32351 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.80027 | 0.267 |
transgenic ySAMdc/azygous control (breaker) | 0.60289 | 0.142 |
transgenic ySAMdc/azygous control (red) | 0.94721 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.19451 | 0.071 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.70045 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.79973 | 0.172 |
Manapal/WT (break) | 0.66741 | 0.333 |
Manapal/WT (red) | 0.67593 | 0.181 |
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