Expression of 1-1-7.2.8.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.801740.052
27DAP/17DAP1.081940.872
39DAP/27DAP1.709660.212
41DAP/39DAP1.109340.844
42DAP/41DAP0.811650.774
43DAP/42DAP1.063941
47DAP/43DAP0.709880.156
52DAP/47DAP2.127290.251
57DAP/52DAP1.107330.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.872640.217
17DAP/reference0.98670.777
27DAP/reference0.972220.61
39DAP/reference0.964250.638
41DAP/reference0.973440.667
42DAP/reference0.909730.233
43DAP/reference1.235010.617
47DAP/reference0.82240.065
52DAP/reference1.232160.069
57DAP/reference1.139570.195

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.717950.105
27DAP/17DAP0.936550.748
39DAP/27DAP1.66830.08
41DAP/39DAP1.141240.997
42DAP/41DAP1.290380.042
43DAP/42DAP1.449250.02
47DAP/43DAP1.054950.817
52DAP/47DAP0.552270.034
57DAP/52DAP1.201750.204
57DAP/7DAP1.306560.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.056740.83
17DAP/reference1.37150.01
27DAP/reference1.280270.131
39DAP/reference1.485050.05
41DAP/reference1.178640.232
42DAP/reference1.43140.014
43DAP/reference1.320740.093
47DAP/reference1.110730.582
52DAP/reference1.407240.021
57DAP/reference1.551610.005

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.987960.831
17DAP/reference0.860130.378
27DAP/reference1.037740.933
39DAP/reference1.3640.023
41DAP/reference1.151890.394
42DAP/reference1.096510.18
43DAP/reference0.949750.486
47DAP/reference1.014420.77
52DAP/reference0.86810.131
57DAP/reference0.949030.46

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.022120.804
17DAP/reference0.927460.381
27DAP/reference1.037360.805
39DAP/reference1.016260.889
41DAP/reference0.906120.417
42DAP/reference0.861870.361
43DAP/reference1.101470.667
47DAP/reference0.830150.168
52DAP/reference1.409040.542
57DAP/reference1.066560.947

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.492540.878
26DAP/20DAP0.997471
34DAP/26DAP1.020341
51DAP/34DAP1.389960.059
52DAP/51DAP0.660950.151
53DAP/52DAP2.279730.039
55DAP/53DAP0.625840.022
57DAP/55DAP0.920630.703
62DAP/57DAP0.827430.466
68DAP/62DAP1.444550.316
68DAP/14DAP1.082470.87

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker4.359770.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.688120.072
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato0.723550.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.907810.804
12-2/M82N/AN/A
12-4/M821.328771
1-3/M821.84821
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M821.045110.512
4-3-2/M821.553450.284
4-3/M82N/AN/A
5-3/M821.58655
6-2/M821.32871
6-3/M821.129041
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M821.51602

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.30009
IL2-6/WTpooled1.141020.531
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.059011
IL12-4/WTpooled0.994021
IL1-4/WTpooled1.56891
WT/WTpooled0.883321

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.176790.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.54659
DC3000/delta hrp 6h1.53218
DC3000/delta hrp 12h1.294221
DC3000/delta hrp 24h1.439950.041

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.620570.162

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.159410.326
Exp 60h1.736140.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.022941
Var 0h1.016421
Var 12h I row2-row11.018080.544
Var 12h NI row2-row11.031241
Var 36h I row2-row11.20270.41
Var 36h NI row2-row11.123730.482
Var 60h I row2-row10.832960.285
Var 60h NI row2-row10.84580.408
Time course 0hI-0hNI1.166970.344
Time course 12hI-12hNI1.238780.009
Time course 36hI-36hNI1.556190.005
Time course 60hI-60hNI2.323510.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.800270.267
transgenic ySAMdc/azygous control (breaker)0.602890.142
transgenic ySAMdc/azygous control (red)0.947211

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.194510.071

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.700450.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.799730.172
Manapal/WT (break)0.667410.333
Manapal/WT (red)0.675930.181