Expression of 1-1-7.3.12.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.076280.947
27DAP/17DAP0.650430.575
39DAP/27DAP1.051180.99
41DAP/39DAP1.179110.988
42DAP/41DAP0.816691
43DAP/42DAP0.962910.91
47DAP/43DAP0.792490.369
52DAP/47DAP1.049920.92
57DAP/52DAP1.740720.837

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.358260.994
17DAP/reference0.939040.777
27DAP/reference1.514160.109
39DAP/reference0.623470.324
41DAP/reference0.838960.434
42DAP/reference0.864650.242
43DAP/reference0.5416
47DAP/reference0.44207
52DAP/referenceN/AN/A
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.074750.569
27DAP/17DAP1.236040.915
39DAP/27DAP1.18760.707
41DAP/39DAP1.51357
42DAP/41DAP1.534160.708
43DAP/42DAP0.816090.503
47DAP/43DAP1.503810.54
52DAP/47DAP0.887980.814
57DAP/52DAP1.100690.596
57DAP/7DAP0.810741

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.256580.025
17DAP/reference1.432990.013
27DAP/reference1.397330.018
39DAP/reference1.610450.006
41DAP/reference1.418270.009
42DAP/reference1.672030.007
43DAP/reference1.673650.007
47DAP/reference1.439330.259
52DAP/reference1.793080.007
57DAP/reference1.431720.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.689930.213
17DAP/reference2.463570.007
27DAP/reference1.387010.516
39DAP/reference1.073360.769
41DAP/reference1.474390.573
42DAP/reference1.245580.144
43DAP/reference0.910750.459
47DAP/reference1.14179
52DAP/reference1.19280.667
57DAP/reference2.237120.089

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.822610.021
17DAP/reference1.483190.427
27DAP/reference1.507330.028
39DAP/reference1.222450.069
41DAP/reference1.074580.213
42DAP/reference1.20970.373
43DAP/reference1.099780.285
47DAP/reference1.324030.934
52DAP/reference0.994450.838
57DAP/reference0.785940.212

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.767190.89
26DAP/20DAPN/AN/A
34DAP/26DAP0.648790.356
51DAP/34DAP1.28384
52DAP/51DAP1.191070.335
53DAP/52DAP1.233390.537
55DAP/53DAP1.502360.534
57DAP/55DAPN/AN/A
62DAP/57DAP1.88426
68DAP/62DAPN/AN/A
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.41630.527

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant0.66084
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.224950.788
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.849061
IL12-4/WTpooled0.931750.71
IL1-4/WTpooled1.274561
WT/WTpooled0.957691

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.035691
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.057910.305
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.026441

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.183820.413