Tomato Functional Genomics Database (TFGD)

Expression of 1-1-7.3.12.2

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.07628	0.947
27DAP/17DAP	0.65043	0.575
39DAP/27DAP	1.05118	0.99
41DAP/39DAP	1.17911	0.988
42DAP/41DAP	0.81669	1
43DAP/42DAP	0.96291	0.91
47DAP/43DAP	0.79249	0.369
52DAP/47DAP	1.04992	0.92
57DAP/52DAP	1.74072	0.837

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.35826	0.994
17DAP/reference	0.93904	0.777
27DAP/reference	1.51416	0.109
39DAP/reference	0.62347	0.324
41DAP/reference	0.83896	0.434
42DAP/reference	0.86465	0.242
43DAP/reference	0.5416
47DAP/reference	0.44207
52DAP/reference	N/A	N/A
57DAP/reference	N/A	N/A

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.07475	0.569
27DAP/17DAP	1.23604	0.915
39DAP/27DAP	1.1876	0.707
41DAP/39DAP	1.51357
42DAP/41DAP	1.53416	0.708
43DAP/42DAP	0.81609	0.503
47DAP/43DAP	1.50381	0.54
52DAP/47DAP	0.88798	0.814
57DAP/52DAP	1.10069	0.596
57DAP/7DAP	0.81074	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	2.25658	0.025
17DAP/reference	1.43299	0.013
27DAP/reference	1.39733	0.018
39DAP/reference	1.61045	0.006
41DAP/reference	1.41827	0.009
42DAP/reference	1.67203	0.007
43DAP/reference	1.67365	0.007
47DAP/reference	1.43933	0.259
52DAP/reference	1.79308	0.007
57DAP/reference	1.43172	0.007

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.68993	0.213
17DAP/reference	2.46357	0.007
27DAP/reference	1.38701	0.516
39DAP/reference	1.07336	0.769
41DAP/reference	1.47439	0.573
42DAP/reference	1.24558	0.144
43DAP/reference	0.91075	0.459
47DAP/reference	1.14179
52DAP/reference	1.1928	0.667
57DAP/reference	2.23712	0.089

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.82261	0.021
17DAP/reference	1.48319	0.427
27DAP/reference	1.50733	0.028
39DAP/reference	1.22245	0.069
41DAP/reference	1.07458	0.213
42DAP/reference	1.2097	0.373
43DAP/reference	1.09978	0.285
47DAP/reference	1.32403	0.934
52DAP/reference	0.99445	0.838
57DAP/reference	0.78594	0.212

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.76719	0.89
26DAP/20DAP	N/A	N/A
34DAP/26DAP	0.64879	0.356
51DAP/34DAP	1.28384
52DAP/51DAP	1.19107	0.335
53DAP/52DAP	1.23339	0.537
55DAP/53DAP	1.50236	0.534
57DAP/55DAP	N/A	N/A
62DAP/57DAP	1.88426
68DAP/62DAP	N/A	N/A
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.4163	0.527

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	0.66084
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	1.22495	0.788
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	0.84906	1
IL12-4/WTpooled	0.93175	0.71
IL1-4/WTpooled	1.27456	1
WT/WTpooled	0.95769	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	1.03569	1
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	1.05791	0.305
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.02644	1

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	1.18382	0.413