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Expression of 1-1-7.3.2.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.824290.103
27DAP/17DAP0.74640.207
39DAP/27DAP1.470020.378
41DAP/39DAP0.756660.223
42DAP/41DAP1.076251
43DAP/42DAP1.002920.937
47DAP/43DAP0.841480.499
52DAP/47DAP1.063520.997
57DAP/52DAP1.140460.873

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.851410.012
17DAP/reference1.320980.061
27DAP/reference1.019020.894
39DAP/reference1.072990.486
41DAP/reference1.096160.338
42DAP/reference1.327950.001
43DAP/reference1.300530.008
47DAP/reference1.080760.199
52DAP/reference0.880760.177
57DAP/reference1.080270.239

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.888090.277
27DAP/17DAP0.956540.748
39DAP/27DAP0.816890.063
41DAP/39DAP1.216060.417
42DAP/41DAP1.064990.708
43DAP/42DAP0.831360.043
47DAP/43DAP1.020750.926
52DAP/47DAP0.73920.08
57DAP/52DAP0.949310.612
57DAP/7DAP0.651590.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.675870.024
17DAP/reference1.556640.007
27DAP/reference1.354630.007
39DAP/reference1.339580.006
41DAP/reference1.465030.009
42DAP/reference1.411740.013
43DAP/reference1.203280.099
47DAP/reference1.103370.604
52DAP/reference1.678490.007
57DAP/reference1.395310.005

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.451910.054
17DAP/reference1.858220.007
27DAP/reference1.647020.016
39DAP/reference1.423140.036
41DAP/reference1.380240.005
42DAP/reference1.359470.022
43DAP/reference1.040630.662
47DAP/reference1.508840.009
52DAP/reference0.943830.327
57DAP/reference1.214850.091

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.434360.029
17DAP/reference1.317680.137
27DAP/reference1.27820.03
39DAP/reference1.230290.019
41DAP/reference1.316310.01
42DAP/reference1.446940.007
43DAP/reference1.386660.033
47DAP/reference0.98840.593
52DAP/reference1.327670.11
57DAP/reference1.301270.049

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.043820.966
26DAP/20DAP1.292870.77
34DAP/26DAP0.872860.816
51DAP/34DAP1.079640.795
52DAP/51DAP0.899931
53DAP/52DAP1.090830.901
55DAP/53DAP1.424170.848
57DAP/55DAP1.160380.986
62DAP/57DAP1.19080.902
68DAP/62DAP0.943630.863
68DAP/14DAP0.760230.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.114290.028

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.078370.666
Mature Green Tomato/Ripe Tomato1.410190.058
Immature Eggplant/Mature Eggplant1.002881
Ripe Pepper/Ripe Tomato1.548670.258
Mature Eggplant/Ripe Tomato1.665770.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.054681
1-1-2/M821.368631
12-2/M821.123861
12-4/M821.071691
1-3/M821.155391
2-1-1/M820.960731
2-1/M820.73062N/A
2-6/M821.01391
3-2/M820.94485N/A
4-1-1/M820.989011
4-1/M820.879831
4-3-2/M821.54290.241
4-3/M821.248511
5-3/M821.108191
6-2/M820.79184N/A
6-3/M820.923711
7-1/M820.839090.443
7-2/M820.991831
9-3-2/M821.178811

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.895071
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.830920.294
IL12-4/WTpooled0.691730.543
IL1-4/WTpooled0.944471
WT/WTpooled0.997641

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.16360.222

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.102630.823
DC3000/delta hrp 6h1.028440.95
DC3000/delta hrp 12h1.004041
DC3000/delta hrp 24h0.946470.455

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.99031
DC3000 delta B/DC3000 delta AB1.175010.259

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.940651
Exp 36h1.078261
Exp 60h1.06271

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.019121
Var 0h1.13881
Var 12h I row2-row10.984431
Var 12h NI row2-row11.177261
Var 36h I row2-row11.161530.298
Var 36h NI row2-row10.756640.478
Var 60h I row2-row10.77410.582
Var 60h NI row2-row10.763810.292
Time course 0hI-0hNI0.828420.111
Time course 12hI-12hNI1.033360.747
Time course 36hI-36hNI1.364530.08
Time course 60hI-60hNI1.769130.01

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.019460.699
transgenic ySAMdc/azygous control (breaker)1.603960.178
transgenic ySAMdc/azygous control (red)1.226480.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.101760.142

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.885580.241

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.884421
Manapal/WT (break)1.120680.381
Manapal/WT (red)1.265860.413